BAC Information

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BAC

Clone NameMSMg01-272F02
Chromosome6 (Build37)
Map Location 43,338,661 - 43,338,910
singlet/doubletsinglet
Overlap geneTpk1
Upstream geneTas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, LOC665747
Downstream geneLOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272F02.T7 (MSMg01no272_f02.b1)MSMg01-272F02.TJ (MSMg01no272_f02.g1)
ACCAG411636AG411637
length735752
length of high quality
(start - end)
317 (44 - 360)250 (72 - 321)
definitionCHROMAT_FILE: MSMg01no272_f02.b1 PHD_FILE: MSMg01no272_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:26 2005CHROMAT_FILE: MSMg01no272_f02.g1 PHD_FILE: MSMg01no272_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGTGTTATTTGGTTCTCT
GGAGTCTATCTTCTTGAGTTCCCTGTATATATTAGATTAATGTACATAAT
AAATAGCCCTCTATCTGATGTATGATTGTTAAAGATCTTTTGGTTGCTTT
TTTGTCTTACTGACAGTGTTCTTTGCCTTACAGAAACTTTCCAATTTTAT
GTGGTCATATTTGTCAATTCTTCATCTTACAGCACAAGCCATTGGTGTTC
TGTTCATGAATTTTCTCCCCTGTGTCCATATGTTCGAGGTTCTTTCCCAC
TTTCTCTATTTTTTCATTGCCCCCCCCCACACCAATTTCTAATTGTAAAA
TTTAGACATTTTCAGGTATGACTATAAAAAATATAATATGTTCAATTTTA
TCAAAACAATTTTGATAATTTTCAGTGCTTATCTTATTTGCATGCAAAAA
GAAAGATAACTTTAACAGTGAATCCAGAAAGATTACTTGTGTAGAATTTA
AAAGCTAAAAACTCAGTAATACTCTTACCTCCTTTTAAAAAAAAATCCAA
ATCAATGTTTTTATATAAGTGGCTAGGAACCTGCATTTCGTGTTTCCCGA
ATGGACATTACAGATGATCTTTGTTGTCTTTTATCCTCAGAGATTATTCC
GCCATTTCTGTTTCATTTTAATCACTTGGGTTTCG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATACAACTGTAGTATTCTAAAAAGAAAA
GCAGCAAACTACATATATGTGGACTGTCCAGTCTTGTTTAGAGTACCTTG
CCTAGCTCTTAGCTAGACATTTGAAGATTGTCATTGACCTGTGGCTCCTA
CACAGAACACTGTGATGGAGTAAGGGAAGCTGGTGGAAGGGGAAAACCCA
GCAAAGCTCATTGTACAAATGTATGAAACGCTCAAAGAATAAAAAAATGA
TGAAAATAAAAGGAATTCACAATATTGTCATGATACTGATCTCTAGCATG
TAGCTTATGGTAGAATCACTCCCGTTACATTGCCCCGATTCAGGAATACA
ATAAAATCATATGTTGAANAACATCCTGAAAAATTCATGAGACTGGATGG
GTGGGTGTTTTGTCCTGCTGATACTGTCTTTTCCCACAATCTTTTTGGGT
ATGCAATCACTACTTACCTATTAAGGAATACTTGGATTTATTCTATAACA
CTAAATATCTTTAAATTGTTGTCTTACACCCATACAAATATATCTTACCT
TTTGTAAATAGTACCTTAATCCTCTCTACATTTTTTGCCACTTGATCTTT
TGACTATGTTGTATGGTTGTCCCATCTCTTATTTTCCAGTACTCATGAAT
ATGTACATCTTTTTATTTACGTTTTATATCCTCCGTACCTTATTTCTTCT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_f02.g1 MSMg01no272_f02.g1 CHROMAT_FILE:
MSMg01no272_f02.g1 PHD_FILE: MSMg01no272_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:27 2005
         (250 letters)



>mm_chr6_43338461_43339110
          Length = 650

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacaactgtagtattctaaaaagaaaagcagcaaactacatatatgtggactgtccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacaactgtagtattctaaaaagaaaagcagcaaactacatatatgtggactgtccag 260

                                                                       
Query: 61  tcttgtttagagtaccttgcctagctcttagctagacatttgaagattgtcattgacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgtttagagtaccttgcctagctcttagctagacatttgaagattgtcattgacctg 320

                                                                       
Query: 121 tggctcctacacagaacactgtgatggagtaagggaagctggtggaaggggaaaacccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctcctacacagaacactgtgatggagtaagggaagctggtggaaggggaaaacccag 380

                                                                       
Query: 181 caaagctcattgtacaaatgtatgaaacgctcaaagaataaaaaaatgatgaaaataaaa 240
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 381 caaagctcattgtacaaatgtatgaaatggtcaaagaataaaaaaatgatgaaaataaaa 440

                     
Query: 241 ggaattcaca 250
           ||||||||||
Sbjct: 441 ggaattcaca 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)