BAC Information

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BAC

Clone NameMSMg01-272J19
Chromosome6 (Build37)
Map Location 34,082,453 - 34,082,739
singlet/doubletsinglet
Overlap geneLrguk
Upstream geneGm1401, Exoc4
Downstream geneSlc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272J19.T7 (MSMg01no272_j19.b1)MSMg01-272J19.TJ (MSMg01no272_j19.g1)
ACCAG411849AG411850
length760748
length of high quality
(start - end)
314 (40 - 353)289 (68 - 356)
definitionCHROMAT_FILE: MSMg01no272_j19.b1 PHD_FILE: MSMg01no272_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:48 2005CHROMAT_FILE: MSMg01no272_j19.g1 PHD_FILE: MSMg01no272_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTGCTTGTCACTGTGCTTCGTATACCCTTCTTTGATTTTAAGAAATTGAT
TATTTCACGTGCTTGTATCGCCTTTATGCAAGAGCCCACGGAGGCCAGCC
AAGGAGGGCATCAGATACCCTGGAATTTGAGCCATAGACAGTTGTGAGCC
ACCATATGAGTGTTAGGAACTAACCCCAGATCCTCTGCAATGACAGTAAG
TGCTCTTAGCTGCTGAGCCATCTCACCAGACCTCCAAAATCTCCAAAGTT
TTACAAAGTTCTTTTTCCTTTCAACTGTCATACGCACACAGGTTTGGGTA
TGTGTGTATTATGTTTATGATGCTCACAGCACGTCAGAGGTGTTGATATT
CCTCCAGTACTAAAGTCACAGGAGATATGAGTTGCTGTGAACTCAGATCC
TCTGCAAGACCAGCATGCACTCCTACCTGCTGGGGCCACCTCTCTGGCCC
CCTTTTAGGATTTTGAGACAATGTAAAGGTTAGTGGNTTAAAAAATGAGT
AAGGAAAAGGCATAAGCTTTCATAGTTATAGAGACTTTTTTTATCCCTCC
AACCAATAATAATTCTAATTATAACTATCCCACAGGACTATTGCGAGGGT
CCAATAAGAAAATGTGCGTATGACAGGCCCTTTGGCGGGAGGNAAGCATG
ATATGGGCCACAAGGCGGTATTATTCCCCTTAATCCTCTCTAGTCTCATA
CGTGGAGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGATGAGGTTTTTGTGTTGAAGGATCTGGTGCG
ATGTCTCCCCGTTCACTCTGTTTTTTGCTCCTTTACATCCGAGTGAATAT
GCATGCCCATGCAGAGACAGAATGACCAGTGTACTTTTCCCCCAGCGCCA
TGTGGCTAAGTTCACAAGCAACACTGTGTGAAACCCTTGAGCACTGTGGG
GAGACTGAAGGGCTATAGGGAAAACTGGGAAGGCCCCAAAGTCAGGATGG
ACGGGGGCACTTTCCGAGTCATTGATACAGGATGCTTAAGTTGGCAGACT
TTTCCATATTTTGTTACACCCCCCCAAAGGAACCATTTGCAGGCCCAGGA
AACGTTCTGCCTGGGAACAGAGAGAGAAGGCCCCGACTGAACCCTTGCTC
GGGAGAGTGACCAGAGCATCTCAAAAGAAGCTAGAGGTCGTAGTTTGCCT
TGGCCATGAGGGCACTGTGTGGTGGTACCTACAGGAAGCAAAGACAGGCT
GACTGGTCTCTCATCTCCCTCTCACTTCTATCTCCCTACCTATCCCTTCC
CCAAATCCACGACTTTGGTTTTGCTTTGTGATACATTTAGTTTAACCAGA
GCCACGTGTGTAATCACAGGATTGAAACTATCACTTGGAGTCTGGTGGGG
ATACCAGGGGGTCCAGAACGGCTCTCCCCTTTCCCTGGTTTGTCAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_j19.g1 MSMg01no272_j19.g1 CHROMAT_FILE:
MSMg01no272_j19.g1 PHD_FILE: MSMg01no272_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:48 2005
         (289 letters)



>mm_chr6_34082253_34082939
          Length = 687

 Score =  501 bits (259), Expect = e-146
 Identities = 281/289 (97%), Gaps = 2/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatgaggtttttgtgttgaaggatctggtgcgatgtctccccgttcactctgttttttg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||
Sbjct: 201 tgatgaggtttttgtgttgaaggatctggcgcgatgtctccccgttcact--gttttttg 258

                                                                       
Query: 61  ctcctttacatccgagtgaatatgcatgcccatgcagagacagaatgaccagtgtacttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 259 ctcctttacatccgagtgaatatgcatgcccatgcagagacagaatgaccagtgcacttt 318

                                                                       
Query: 121 tcccccagcgccatgtggctaagttcacaagcaacactgtgtgaaacccttgagcactgt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcccccagcgccgtgtggctaagttcacaagcaacactgtgtgaaacccttgagcactgt 378

                                                                       
Query: 181 ggggagactgaagggctatagggaaaactgggaaggccccaaagtcaggatggacggggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| 
Sbjct: 379 ggggagactgaagggctatagggaaaactgggaaggccccaaagtcaggatggataggga 438

                                                            
Query: 241 cactttccgagtcattgatacaggatgcttaagttggcagacttttcca 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cactttccgagtcattgatacaggatgcttaagttggcagacttttcca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 687
Length adjustment: 9
Effective length of query: 280
Effective length of database: 678
Effective search space:   189840
Effective search space used:   189840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)