BAC Information

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BAC

Clone NameMSMg01-272L10
Chromosome6 (Build37)
Map Location 81,255,209 - 81,255,544
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043390, LOC100042991
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272L10.T7 (MSMg01no272_l10.b1)MSMg01-272L10.TJ (MSMg01no272_l10.g1)
ACCAG411920AG411921
length757753
length of high quality
(start - end)
341 (377 - 717)301 (68 - 368)
definitionCHROMAT_FILE: MSMg01no272_l10.b1 PHD_FILE: MSMg01no272_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:56 2005CHROMAT_FILE: MSMg01no272_l10.g1 PHD_FILE: MSMg01no272_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGAATTCACA
AAAATTACTTATCACAGCTCAAACAATACTTGGAGATTAATACGTAAAAG
TTAATTTCTAAATAAACCCATAAATACTAAAGTATATTGATTTTATCTTT
GATCGGAGAAGTTAAAAATTGGGAGATAGCTCATTTAGTAAAGTTTGTAT
CACACACACAATTACAAGGGCCTGAGTATGGATCACCAGGAAATATCTAT
AGCATCAAGTGTGGTGACACATGTGTGCCTGTTATTCCAGTGTTGGGATG
CCAGAAATAGGGCTTTATCTGTGATTTGCTGACCAGCACATCTAGCTGAA
TTCATGTGATAACTTCTCTATACGAGCCCCTATGTCAAAAAGTCAACTGG
GTAATGACTAAGCACAAAACATCAAACTATTCCCACCACACTTACAAATA
TAAATGCACACAAATGCACACATGCATACATACATATATACACAAAGCAG
GTAAAGGGAAATTAATAGTTCTGGTGAAATTAAAACAACCAGAAAATAAT
TAGAAAAAAATAGTACTAGAAAAGATTAATAGCATCAAAGATTCTCTTTC
GAAAAAAGTAGAATTATTAGCAAATATTAAATGCAGACATGAATAGGTCA
CAAATAAGTAGTAAATATGAATGAATTTATAACAATGATAATTACTAAAG
AAAAGGTCATGAATCTAAGTATGAAAGGAGGAGGGCGATGGAGGGGTAGA
AATGATA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGGT
GTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGG
TTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCG
TATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGAT
GGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTG
AGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTAT
CTTTGTTGGATTTTTCTGCGCCCCACGCATCAGAGTAATAGTGGCTTCAT
AAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGTTTG
TGCAGAACTGGAATTAAATCTTCTTTGAAGGTCTGATAGAACTCTGCACT
AAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAACTG
CTTCTATTTCTTTAGGGAATATGGGACTGTTTAGAAGGTCAACTTGATCC
TGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTC
CAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTANAAGGATCTGATGT
AGTTTTGGATTTCTTCAGGATCTGCTGTTATGTCTCCCTTTTCCAGTTTG
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_l10.b1 MSMg01no272_l10.b1 CHROMAT_FILE:
MSMg01no272_l10.b1 PHD_FILE: MSMg01no272_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:56 2005
         (341 letters)



>mm_chr6_81255008_81255744
          Length = 737

 Score =  545 bits (282), Expect = e-159
 Identities = 324/340 (95%), Gaps = 4/340 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccctatgtcaaaaagtcaactgggtaatgactaagcacaaaacatcaaactattcccacc 61
           ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct: 202 ccctatgtcaaaaagtcaactgggtaatgactaagcacacaacatcaaccttttcccacc 261

                                                                       
Query: 62  acacttacaaatataaatgcacacaaatgcacacatgcatacatacatatatacacaaag 121
           |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 262 acacttacaaatataaatgcacacaaatacacacatgcatccatacatatgtacacaaag 321

                                                                       
Query: 122 caggtaaagggaaattaatagttctggtgaaattaaaacaaccagaaaataattagaaaa 181
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 322 cagataaagggaaattaatagttctggtgaaattataacaaccagaaaataattagaaaa 381

                                                                       
Query: 182 aaatagtactagaaaagattaatagcatcaaagattctctttcgaaaaaagtagaattat 241
           |||||||||||||||||||||||||||||||||||||||    ||||| |||||||||||
Sbjct: 382 aaatagtactagaaaagattaatagcatcaaagattctc----gaaaagagtagaattat 437

                                                                       
Query: 242 tagcaaatattaaatgcagacatgaataggtcacaaataagtagtaaatatgaatgaatt 301
           |||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 438 tagcaaatattaaatgaagacatgaataggtcaaaaataaatagtaaatatgaatgaatt 497

                                                   
Query: 302 tataacaatgataattactaaagaaaaggtcatgaatcta 341
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tataacaatgataattactaaagaaaaggtcatgaatcta 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 737
Length adjustment: 9
Effective length of query: 332
Effective length of database: 728
Effective search space:   241696
Effective search space used:   241696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)