BAC Information

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BAC

Clone NameMSMg01-272M22
Chromosome6 (Build37)
Map Location 99,746,859 - 99,747,150
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665979, Foxp1, Eif4e3, Gpr27, Prok2, LOC384466
Downstream geneLOC626503, LOC100043703, Rybp, Shq1, LOC625221, BC049816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272M22.T7 (MSMg01no272_m22.b1)MSMg01-272M22.TJ (MSMg01no272_m22.g1)
ACCAG411987AG411988
length589770
length of high quality
(start - end)
---292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no272_m22.b1 PHD_FILE: MSMg01no272_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:03 2005CHROMAT_FILE: MSMg01no272_m22.g1 PHD_FILE: MSMg01no272_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGNAGAAGGGAATC
CCGGCGGGNAAAATTCCCTTGTAAAAGGGGTTGCTTTTAAAAAAGTCAAC
AGAAGGCCCAATGTTGAAAAAGGGGTTAACAGCCAACCCTCCCAGCAAAA
AAAGGGAATTGGGAATTCCTTCCTTTTCCCCCAAAGGAAAAAGGGGGTTG
GGCCCAAAAAAACGGGTTTGGAAATTTTTCCCCCCGGGGGGGGGCGGAAA
CCCCGGGAAAAAAAAGGGGGGCTCCTTTTATTATTTCCCCCCCAAAGGGG
GGGGCCCCCCCCCCTGGGAAAAAAAAAAAGGGTTTCTCCCACAAAAAAAA
AAGCCGGGCGCCCCCCTCTTTCTCTTTCCTTTTACTTTTATTTTTTTTTT
TCTGNGTCGCGGTTCCTTCTCCTTCTCTCCCTCCTGTTTTTATTACTGTC
CGTTCTCCTATNNCCCAATCNCCAAACAACCCGCTTTTTTTTTTGCTTTT
TTGATAANGAAGAGGCCGCAACCCCCCCCCNCTCCCCCCCCCCTTNCCCC
TTTCCCCCCCCCCCCCCCTCTTTTGAATATTTATTTTTG
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGTTTCTTAGAAAATATTCCT
TAGGATTGTCATTATTCAATCACATGGAAAGTTTTAGTACAAACTCCTTG
AAACTAATCATTTCTGTTTTGGAAAATTTAAATTATGAATTCAATTTTTG
ATATTTCTAGCGGTATTCATATCTCTTCCTCATACTGGGTGCATATGTCA
TGCTCTGTGGAATCTGAGTCAGCCACTCCCCTATTTCTCACATTAGTATT
TAGTTTTCTTTTTTTGCCAATCTTTTCAGAAAATTAGGAATTTTATTGAT
ATTTTGAGGGGGAAAATAATTATATTCTTTCCCGCCCCCTTTCTCTGTAT
TTTTGTCGTGAATTTTTAATGTTTTGCTTTGCTCCTGTTCTCTGAGACAA
GGTCTCACTCTGTAGCCTAGACTTTCTAGAACTTGATGTGCAACCCAGGC
TAACTTTGAACTCGTGGCTACCCGCCTATCTCAGCCTCCTGGGTGCTGCG
ATCGATTCCAGGCCTGACCCTCATGCCCAGCTTTGACTTGGATTTTGCCA
TCTCCTTGACTTGGGCTCCTTTGTTCACGGTTTGAGTTTCTCTCTAAGCG
CCGCTTTAGTTCCTGTTTCCGACTTGTCTGCTCCCCGTTCCCCCTGTGTA
CAGTCCCTCGCTGCCCCAGAAGCTTCCGTTTGTACTGTACATTAATTATC
AACGATTGTTTCATCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_m22.g1 MSMg01no272_m22.g1 CHROMAT_FILE:
MSMg01no272_m22.g1 PHD_FILE: MSMg01no272_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:03 2005
         (292 letters)



>mm_chr6_99746494_99747185
          Length = 692

 Score =  495 bits (256), Expect = e-144
 Identities = 283/292 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagtttcttagaaaatattccttaggattgtcattattcaatcacatggaaagtttta 60
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 657 ctcagtttcttagaaaatattccttagaattgtcattattcaatcatatggaaagtttta 598

                                                                       
Query: 61  gtacaaactccttgaaactaatcatttctgttttggaaaatttaaattatgaattcaatt 120
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 597 gtacaaactccttgaaactaaccatttctgttttggaaattttaaattatgaattcaatt 538

                                                                       
Query: 121 tttgatatttctagcggtattcatatctcttcctcatactgggtgcatatgtcatgctct 180
           ||||||||||| | | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 537 tttgatatttccaacagtattcatatctcttcctcatactgggtgcatatgtcatactct 478

                                                                       
Query: 181 gtggaatctgagtcagccactcccctatttctcacattagtatttagttttctttttttg 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtggaatctgaatcagccactcccctatttctcacattagtatttagttttctttttttg 418

                                                               
Query: 241 ccaatcttttcagaaaattaggaattttattgatattttgagggggaaaata 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ccaatcttttcagaaaattaggaattttattgatattttgagggggaaaata 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)