BAC Information

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BAC

Clone NameMSMg01-272P06
Chromosome6 (Build37)
Map Location 102,122,328 - 102,122,647
singlet/doubletsinglet
Overlap geneCntn3
Upstream genePdzrn3, EG666084
Downstream geneEG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272P06.T7 (MSMg01no272_p06.b1)MSMg01-272P06.TJ (MSMg01no272_p06.g1)
ACCAG412093AG412094
length762761
length of high quality
(start - end)
325 (37 - 361)293 (66 - 358)
definitionCHROMAT_FILE: MSMg01no272_p06.b1 PHD_FILE: MSMg01no272_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:14 2005CHROMAT_FILE: MSMg01no272_p06.g1 PHD_FILE: MSMg01no272_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCC
TGCTTAGCTGAGCAGCACAAAAATTTTAACCCTCACAACCACAGTGGGCA
TCTGAAGGCATGGAATCAAGTCCCTGACATGACTGACAGTGTACCTTGTA
GAACTTCTAACTCCATTCTTAGTCACAGTTCCATCTGAAAATATGATCTA
CAACAGCTAGACATGGGCCAGATCTAATGGACTTAACAGATGGTCTATAT
TTCAAAGTGACTTCTCAGGTTTGGAGTCTACAGGCTTTTTTTTTTTTTTT
TAATTTGTCAAACTTCTATTTTGACAGGAGGATATAATAGCAAAGAATGG
AGACATTTAATTTGTTTTATCCACCCCCGATACTTAATTGGATTTAAAAC
ATAATATACATGGGCAGTCCCTAAAATTCCTGGGAGAATTTAAATATTAT
ACAATAATGTAACACTATGCCAAAAAGGCTTTTTAATTATGGTCTATCTT
TGAGCATCTGGCATGATACTTTCTGTGTCTGGCTTTCTAACTTTTCAACA
TTTGCTTTATTAGAGATTTCATTTATTCTATAGATGTCTGTCTGCAAAGA
GCCCAATGATGGTGACATGGCTATGCCTAGATAAAGCCAGAGCATAAGAC
ACCATTATCAATGGGAAAACAGTTTCAAAAATGGTTGCCTATTATCAAGG
TGAGATAGTACACATTTATGGTGGCCTGTTTTTATTCTTGGTGCTGTGAT
CAAACGCCTTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACAATTTTGATCAATCTTAAGAAATATGTACAAAC
CATGTCTTTAAGAAAGAAAACATGTCTAGACTAAATATAGACCTCCCAGC
CTGGAAGAGTAAAGATCCATATGCAATCAGGAATTAGATATCAGCTGATA
CTTCACTAAAGATAATCTATGGGTGGGATATAAGCACATGAAGATAATCT
AATCATTAGCCTTTAAGGTGATGCAAATTAAAACCAGTTTGAGTTATTAC
TACACACCTGTCAGCATTTACCCCCCTGAATGCACCCAGCTGTGCTCTGT
TCTCTGATGTATCTGACACACCCCTATTTAACTGTCCATACATAAATATC
CATGGTGCACAGTGGATTCTTGACACATTTAAATAATAGTTATTTCATTG
TTTATGAGTATGGGTGCTTTCCCTATGTATATCTATGGGCGTCGTGTAAA
TACAGTGCTGGCAGACCTGAGAATAGGGTTCAGTCCCCTGGAAATGGAGT
TAAGGGGGAATATATTTTGCTGTGTGGGTGCTGGGTGCTGAACTTAATGT
CCTCTTANCTTCTGAACTCTCTCCCATGTCCTCCTGTCCCATGCTTTATA
TTTCCTATAGTCTTTAATTAGACTCTAGAATAATCTTGAGATATTTAACT
TGGATTGAATATTATACATGTTCATAGGAAACCACAAAGGTATATTTGAT
ATATTAAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_p06.b1 MSMg01no272_p06.b1 CHROMAT_FILE:
MSMg01no272_p06.b1 PHD_FILE: MSMg01no272_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:14 2005
         (325 letters)



>mm_chr6_102122124_102122848
          Length = 725

 Score =  549 bits (284), Expect = e-161
 Identities = 311/320 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcctgcttagctgagcagcacaaaaattttaaccctcacaaccacagtgggca 64
           |||||||||||||  || | ||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcagcctgcacaggtaagcagcaaaaaaattttaaccctcacaaccatagtgggca 264

                                                                       
Query: 65  tctgaaggcatggaatcaagtccctgacatgactgacagtgtaccttgtagaacttctaa 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgaaggcatggaaccaagtccctgacatgactgacagtgtaccttgtagaacttctaa 324

                                                                       
Query: 125 ctccattcttagtcacagttccatctgaaaatatgatctacaacagctagacatgggcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccattcttagtcacagttccatctgaaaatatgatctacaacagctagacatgggcca 384

                                                                       
Query: 185 gatctaatggacttaacagatggtctatatttcaaagtgacttctcaggtttggagtcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 gatctaatggacttaacagatggtctatatttcaaagtgacttctcatgtttggagtcta 444

                                                                       
Query: 245 caggcttttttttttttttttaatttgtcaaacttctattttgacaggaggatataatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggcttttttttttttttttaatttgtcaaacttctattttgacaggaggatataatag 504

                               
Query: 305 caaagaatggagacatttaa 324
           ||||||||||||| ||||||
Sbjct: 505 caaagaatggagaaatttaa 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)