BAC Information

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BAC

Clone NameMSMg01-272P23
Chromosome6 (Build37)
Map Location 76,467,395 - 76,467,714
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
Downstream geneLOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272P23.T7 (MSMg01no272_p23.b1)MSMg01-272P23.TJ (MSMg01no272_p23.g1)
ACCAG412125AG412126
length751806
length of high quality
(start - end)
328 (42 - 369)---
definitionCHROMAT_FILE: MSMg01no272_p23.b1 PHD_FILE: MSMg01no272_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:17 2005CHROMAT_FILE: MSMg01no272_p23.g1 PHD_FILE: MSMg01no272_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGCTTTCATTTTCCATAAATGGTAAGTATTATATATCAAAATATTGTTC
TAAAACATATTTGGTTATATAACCACTTCATATACTTGTAGAACTGTGGT
CATATACATTTTCCCTAGTCAAAATGGGTCACAAGTAGAAAATGTTGAAA
AGCTTTGTTGCATTTGTCACAGAAAGTTATATTAGTAGTTACACATCATA
AGGATTTCTGGAAAATCAGAAACCACCTGAAAATGTGAAACCTTATTTCT
TAATCCATGGGCAACAAAAAACCAAACTGAACATAACCAATCACAAGGAT
TGCACTTTGGTTTTTTTTTGCAACACCCCACGTGTGGTGCAGCTAAAGTG
CTTATAAAGAGATATTTATCACTCTAAGGATTAATGGTAGAAAAGAGATA
TCTCAAAAAACCTCAGAAGAGGGATTAAACCTTTTAAAGAAAAAAAAGTC
CTGTATTTATTTTCCTTTATTTTTAATTTTCTGTGTATGGGAATGCTAGC
TGCAGGTACATCTGCTATCACATGCATGCAGTACTGTTAGAGGNCAGAAG
AGAGCGTTGGATTCCCCAGAACTGGAGTTACCATGAATAATCATGTGAGC
AATGGGAATCAAATTATTCTTTTTTTTTTTCTTTTGATTTTTCAAGATAA
AGTTTTACTGTGTGGCCCTGGCTGTCCTGGAACTTGCTTTGTAGACCAAG
T
GCGCGGTGGCCGGCGACCAAAGTTCCCAACGGGCGGGNNNGCCCGAGTTC
CAAAAAGGGGGGGGGGGAGGGAAGAAAGGAGGGAGGGGGNGGGGGTTTAA
ACATCTACCGTCGGGNNNNNNGNNNNNTNNNNNNNTNNNGTTNNTTTTTT
TGTTGTTTTTTTTCGTTTGTGTGTTCGGGGTGNTTCGCCCGGGGGCCCAC
TGTTGCGTTGTGGCTCGCGCGTTGGCGGGGCTTCGAGTGGGGTGGCTGTT
GTGGTGGGGGGGCGGGGGGGTGTGGGCGGGGGGGGGGGTTGTTTTGTGGG
GGCGGGGGGTGGGGGGGGGGGGGGGTTTTTTGATTTTTTCCNNNACCGNN
CCCGTTTTGTTTTTGTTTTTTGTGATGTTTGTNTGTGTGTGGGGAAAACC
TCTATCCNTAAAAAGGGGGGGTTCTGCTTTCGGGGTGATNTTTCCTAACG
ACGCGGGGAGTGGGTGGGGAGCGGCGGGAAGGGCGCGGAACGTAGGAGAT
GTGGGGGCGGGGTGAGGGGTGGGGTCGTTGGAGCGGGAAGGGAAGTGGGG
GCACCGACTGAGGGTGAGATGGGGTGAGAGGGCGGGGGGGGAGGACTAAG
AAACCGTTGGGCGGGCGAGGGTGATTGGGAACTGTGGAAGATGGGGGGGG
GGGTGTGTTGAGGTGTGGTGGGAGAGTAAGAAAAGTTGTGAAGAGGGAGA
ACGGGGGGGAGGGAATGGGAGAGAGAGCGGGGGGGATGGTGGGGAGGGGA
GGGGACGGGCAGGGGAGGGGTGGGAGGCGTGGAGGGAGGAAGGGGGCGGG
GTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_p23.b1 MSMg01no272_p23.b1 CHROMAT_FILE:
MSMg01no272_p23.b1 PHD_FILE: MSMg01no272_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:17 2005
         (328 letters)



>mm_chr6_76467192_76467919
          Length = 728

 Score =  598 bits (309), Expect = e-175
 Identities = 318/321 (99%), Gaps = 2/321 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgctttcat-tttccataaatggtaagtattatatatcaaaatattgttctaa 62
           |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggaattctgctttcatcttt-aataaatggtaagtattatatatcaaaatattgttctaa 465

                                                                       
Query: 63  aacatatttggttatataaccacttcatatacttgtagaactgtggtcatatacattttc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aacatatttggttatataaccacttcatatacttgtagaactgtggtcatatacattttc 405

                                                                       
Query: 123 cctagtcaaaatgggtcacaagtagaaaatgttgaaaagctttgttgcatttgtcacaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cctagtcaaaatgggtcacaagtagaaaatgttgaaaagctttgttgcatttgtcacaga 345

                                                                       
Query: 183 aagttatattagtagttacacatcataaggatttctggaaaatcagaaaccacctgaaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aagttatattagtagttacacatcataaggatttctggaaaatcagaaaccacctgaaaa 285

                                                                       
Query: 243 tgtgaaaccttatttcttaatccatgggcaacaaaaaaccaaactgaacataaccaatca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgtgaaaccttatttcttaatccatgggcaacaaaaaaccaaactgaacataaccaatca 225

                                
Query: 303 caaggattgcactttggtttt 323
           |||||||||||||||||||||
Sbjct: 224 caaggattgcactttggtttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)