BAC Information

Click to search

BAC

Clone NameMSMg01-273K07
Chromosome6 (Build37)
Map Location 129,692,267 - 129,692,556
singlet/doubletsinglet
Overlap genenone
Upstream geneKlrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2
Downstream geneGm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273K07.T7 (MSMg01no273_k07.b1)MSMg01-273K07.TJ (MSMg01no273_k07.g1)
ACCAG412588AG412589
length736738
length of high quality
(start - end)
358 (379 - 736)290 (71 - 360)
definitionCHROMAT_FILE: MSMg01no273_k07.b1 PHD_FILE: MSMg01no273_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:03 2005CHROMAT_FILE: MSMg01no273_k07.g1 PHD_FILE: MSMg01no273_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGAAGTTAGACTCTGGAAAACCAAATAACCATTAAAAATGGGATGCAGAG
GTAAACAAAGAATTCTCAAATGAGGAATACTGAATGGCTGAGAAGCACCT
ACAATAGTGTTCATCATCCTTATTATCAGCGAAATGCAAATAAAAACAAC
CCTGAGATTCCACCTCACAACAGTCAGAATGGCTAAGATCAAAAACTCAG
GTGACAGCAGATGCTGGCAAGGATTTGGAGAAAGAGGAACACTCTTCCAT
TACTGGTGGGATTGCAAGCTTGGACAACCACTCTGTAAATCAGTCTGGCA
TTTCCTCAGATAATTACCCCCCCCCCCCCCGGAAGATCCAGTAATACCAG
TCCTGGTCATATACCCAGAAGAAGATCCAACTTGTAATAAGGATATATAA
TACACTATGTTCATAGAAGCCTTTTTTATAATATCCAGAAGTTGGAAAGA
ACACAGATGTCCCTCAAAAGAAGAGAAAGCAGATACATAAAATGTGATAC
ATTTATACAATGGAAGACTACTCAACTATTAAAAGCAATGAATTTATGAA
ATTCTTGGAAAATTGGATGGATCTGAAGGATATTCTGAGCAAGGTAAACC
AATCACAAAAGAACACACATGATATGCACTCACTGATAACTGGATTTGTG
CCTTACAAATACAGAAGTGGATGCTCACAGCCATCC
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTAAGAAAGCAGGATGAGCAAGACATGAG
GAACAAGTCAGTAAGCAGCACCCCTCCATGGCCTTTGAGTCATCCCCTGG
CTCCAGATCACTGACCAGTTTGAGTTCCTGTCATGATTTCTGTGATGCAG
AAGCATAAGCTCAATAACTCTTCTTCCCCTGCCACCAAAAACAGAAATGT
CGAGGGCAAAAGAGGTAAACCAACTGAAAGACGATGGGACTCATCACTCT
ATTGCTTATAGAATGATCACATTCCATGACTTCATAAAAACTATTTCCCC
TTAAGATATCCTCTTCAGATCACCTGAACGGGGTGTGATGTAACATCCAA
AAATGACAGCTATCTGAAACATAGATGAAACAACTGAATAAAAGCAACTG
CAAGCACCCACTGGAAGAGTCACACTGGATATGAGATCTTAGTTATGACC
AAGATGTGTCAGACTAAGAAATTATGCTATTTTCCACTTTAAAAATATTC
AGGCATGGCCAGCGAAGATGATTCAGCCTTTAAAGGTTAAACTCACAGCC
AAAAATATTGAAGCGGCATTGTAGGTTATATAGACCTAAACATGATTCTG
ATCTCTAGTCCTGCCTCATTTGGGGTATTCCCAATACTGGGGACACTTGT
CAGTCTTCACCCACTATCTCCTTTCTATACAGCTGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_k07.g1 MSMg01no273_k07.g1 CHROMAT_FILE:
MSMg01no273_k07.g1 PHD_FILE: MSMg01no273_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:03 2005
         (290 letters)



>mm_chr6_129692067_129692756
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaagaaagcaggatgagcaagacatgaggaacaagtcagtaagcagcacccctccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaagaaagcaggatgagcaagacatgaggaacaagtcagtaagcagcacccctccatg 260

                                                                       
Query: 61  gcctttgagtcatcccctggctccagatcactgaccagtttgagttcctgtcatgatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctttgagtcatcccctggctccagatcactgaccagtttgagttcctgtcatgatttc 320

                                                                       
Query: 121 tgtgatgcagaagcataagctcaataactcttcttcccctgccaccaaaaacagaaatgt 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgatgtagaagcataagctcaataactcttcttcccctgccaccaaaaacagaaatgt 380

                                                                       
Query: 181 cgagggcaaaagaggtaaaccaactgaaagacgatgggactcatcactctattgcttata 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 cgagggcaaaagaggtaaaccaactgcaagacgatgggactcatcactctattgcttata 440

                                                             
Query: 241 gaatgatcacattccatgacttcataaaaactatttccccttaagatatc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatgatcacattccatgacttcataaaaactatttccccttaagatatc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)