BAC Information

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BAC

Clone NameMSMg01-274A24
Chromosome6 (Build37)
Map Location 47,929,149 - 47,929,512
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601
Downstream geneZfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274A24.T7 (MSMg01no274_a24.b1)MSMg01-274A24.TJ (MSMg01no274_a24.g1)
ACCAG412897AG412898
length753757
length of high quality
(start - end)
344 (371 - 714)364 (379 - 742)
definitionCHROMAT_FILE: MSMg01no274_a24.b1 PHD_FILE: MSMg01no274_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:33 2005CHROMAT_FILE: MSMg01no274_a24.g1 PHD_FILE: MSMg01no274_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTG
TTTATCCATTGCTCCTGTCATCGAATGGGCGCCATTCCCCAGAGGGTTAG
CCATCTCTGCTACCCTGTCCTGTGCACTTAGGGAAACACACACAGTGTGC
TGTCTCTTATGTCATCTTGTCTACATCATGTCTAACTAACCAACTTGTGG
ATGAGATCATAACTTCACATCCTCTTCCCTTCTGACTTTCCAGATCCAGT
CGTATCCCAGCTTTTGGTTGGATGACTCTGTGTTTATATCAGGATGATTT
GTTCACACTGTGGGACTGACCTCAGTCATTCTAAGCTGGATCAAGATAGC
AGGTGTTTCTTTTGTTCTTCCTCAAGTTAATGCAGTCTCATGCTTAAACC
TTTCCATTTCTCTCAACATCTTCCATACATGTTGAGTTCTCTATGAAATA
TCTTTCTGAACAACTTTCCATGCATAGATCATCAATAATAAACATCTGTA
CTTTCTGTTTCCTGTAGTGACCCAGGTTCCTGCTCCTTTGTTCTGGTTGC
CCACAAACCATACTGCACAGCCAAGGCACTGTGAATCCCTGCACCTTCAC
CAGGTAATTCATTCTTTCTACCATCTCTTCTGTGTGGAAGTCTCTCTTTT
CAGATTTTCAAGTTCTTCAACGTTTCTTGTCAAAATGACATTTCTTCCTT
TGGGAGATGAACCGTTGCTATAAGAGGTGGATGAAGTAAAATCTAGCCTT
TGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGATATTCATTGGCTTCTCTGATAGTTCCACTG
TTGTGGCCCATTAAACCCCTTTTATTTTGTATCTATTAAAATTTAATGTG
AATCATTCACAGCTAGTGTGGCCATAACAGCAAAGAGAAGGTAAATTGGT
TCAGAGAGGCTCTTTCTGCCAGCAGGGGGTATAGCTCAGTGGTAGAGCAT
TTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCTTACA
GGCCCATAGTCGAGGGGTACTCTTTTGAGTGTGTGGTAAGTACCATTTAG
GAGAAAATTATAATGACGTCCCCCCAAGAAGGACATTTCCTAAGATATTT
CTTAAGAGGTGAAGAAATCAGAATCGGTAGTAGGTGTCCACCAGAGGGAG
AGAGAGAGCAAGCTGAAACTGGGAAAACAAAACCACTGATAGAGTATTTG
CTTGGAAGCACAGCTACACAGATGACCTGGCTCATTGACATTTCACTTCC
CTTGCGCAGGGCTTAGTCTCATTTCCTTTGAGCTTTTTCTTTTCCCCCAC
AGCTGACAAAAGCATCGACCAAAATAGTTTCTCCTTGTTGATCTACACAC
TGGGCTTAAGCTCAAAGACCCCTTGGCCTTGGGGTTTGGTAAGAGAGCAC
AATTGATGTGAAGGACAAGAAACCCAACATAGGTTTACTGTGGTGTTTAT
TCACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_a24.g1 MSMg01no274_a24.g1 CHROMAT_FILE:
MSMg01no274_a24.g1 PHD_FILE: MSMg01no274_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:33 2005
         (364 letters)



>mm_chr6_47928949_47929712
          Length = 764

 Score =  681 bits (352), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggacatttcctaagatatttcttaagaggtgaagaaatcagaatcggtagtaggtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggacatttcctaagatatttcttaagaggtgaagaaatcagaatcggtagtaggtgtc 260

                                                                       
Query: 61  caccagagggagagagagagcaagctgaaactgggaaaacaaaaccactgatagagtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccagagggagagagagagcaagctgaaactgggaaaacaaaaccactgatagagtatt 320

                                                                       
Query: 121 tgcttggaagcacagctacacagatgacctggctcattgacatttcacttcccttgcgca 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttggaagcatagctacacagatgacctggctcattgacatttcacttcccttgcgca 380

                                                                       
Query: 181 gggcttagtctcatttcctttgagctttttcttttcccccacagctgacaaaagcatcga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggcttagtctcatttcctttgagctttttcttttcccccacagctgacaaaagcatcga 440

                                                                       
Query: 241 ccaaaatagtttctccttgttgatctacacactgggcttaagctcaaagaccccttggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaaatagtttctccttgttgatctacacactgggcttaagctcaaagaccccttggcc 500

                                                                       
Query: 301 ttggggtttggtaagagagcacaattgatgtgaaggacaagaaacccaacataggtttac 360
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 501 ttggggtttggtaagagagcacaattgaggtgaaggacaagaaacccagcataggtttac 560

               
Query: 361 tgtg 364
           ||||
Sbjct: 561 tgtg 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)