BAC Information

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BAC

Clone NameMSMg01-274B10
Chromosome6 (Build37)
Map Location 105,582,698 - 105,582,802
singlet/doubletsinglet
Overlap geneLOC100043350
Upstream geneCntn6, LOC384470, LOC100043716
Downstream geneCntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274B10.T7 (MSMg01no274_b10.b1)MSMg01-274B10.TJ (MSMg01no274_b10.g1)
ACCAG412915AG412916
length742748
length of high quality
(start - end)
202 (124 - 325)105 (213 - 317)
definitionCHROMAT_FILE: MSMg01no274_b10.b1 PHD_FILE: MSMg01no274_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:35 2005CHROMAT_FILE: MSMg01no274_b10.g1 PHD_FILE: MSMg01no274_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGATCTCTCTCATACTTTTAACATGAAGCAGTGTTGTATTTTGTCAAATG
CATTTTCTCCATCGAAGGACATAATCATGTGGTTTTTTTCTATGAATTTG
TTTATATAATGGATTTCCTTATATTAAACAAACTTTCCATTGCTGGGATG
AAGCCTACTTGATTGTGGTGAAAGATGGTTTTGATGTGTTCTTAGATTTG
GTTTGAAAGAATTTTATTGAGTATTTTTTGTCGATATTCATAAGTGAAAT
TGGTCTGAAGTTCTCTTTTTTGGTTGGGTCCTTGTGTGGTTTAGGTATCA
GAGTAATTGTGATGTTCTACACCCCCCCACGGAGTGTTCCTTCTGTTTCT
ATTTTACTGAATAGTTTGAGGAAAATTAAATGACATTGGGTCTTCTTTGA
ACGTCTGGAAAAATTCTGCACTAAATCTATCTTGCCCTGTTTTTTCTTTT
CTTGTGGGTAGGGGGGGTTAATGACTTCTTCTATTTCCTTCTGTGATATG
GGCCCATTTAAATAGCTTACCTGCTCTTGATTTAACTTTGGCATGCGGCT
TCTCTCTAGAAAACCATCCATTTTATCTAGATGTCCCAGTTTTGTTGAGC
ACATGCTTTCACAGTATGACTTGATGATTTTTTTTGAATTTCCCCTATTT
CTCTTGCTATGTCTCCCTTTTTATTTCTGATTTGTGTCGATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTATAAAAGCNGATAGTTTATGATTGCTGAGA
TTCATGAAAGTCTTCCCCAAATTTAAGAGACCAGGGATGTGTCCATTCCT
CATGAAGTTCTTTCTCTGATACAGGGAAAATGTTGAATGACATGGAGGTT
ACAGGGAAGGAATGATGGGATAGTGAGAATATGCCTAACAGCTAATGGCT
AATGCAATGTGCTCTAAGTCCCCTGTGTTTCAGACCTTGATTCCAGAGTA
AATCTCATATCTATGTAGTTTCAGATTAGCTCCAGATGACCTGACCTGTT
TACACTTTAAGTAGTTCCCCCCCCCCCCCCCTACTAGGTGGCTGAGGAAA
ATATAATGACTAAGATTCTGGCCAGAAAGATTCCCAGAAAGATTGTGTCT
GATATTTATTTTGTGTGTTTCTCAATTTGCCTTTGCTGTGCCTCTAAAAT
TATAGAAAGAATACCGATCTATAACTACTCATCATTGTATCTTTTTTCCT
CTATCGAATGACGGTTATCTCACTCACCCGATATCTTATTTTCACTCCTC
ATTGCTGTGCTTGCTATGGTTCCTTCACAGGAAACTTGCTTCACTTGGCT
TCCTTCTCCAGAAATTGTCCACCCCTCCTTGGTTAGCCCCGGTCACCCCG
ATTTTGGCCGTATCTAACTTACAGGTGATCTTCTGTTTCCTCACCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_b10.g1 MSMg01no274_b10.g1 CHROMAT_FILE:
MSMg01no274_b10.g1 PHD_FILE: MSMg01no274_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:35 2005
         (105 letters)



>mm_chr6_105582498_105583002
          Length = 505

 Score =  188 bits (97), Expect = 1e-52
 Identities = 103/105 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatgggatagtgagaatatgcctaacagctaatggctaatgcaatgtgctctaagtccc 60
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 305 tgatgggatagtgagattatgcctaacagctaatggctaatgcaatgcgctctaagtccc 246

                                                        
Query: 61  ctgtgtttcagaccttgattccagagtaaatctcatatctatgta 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctgtgtttcagaccttgattccagagtaaatctcatatctatgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)