BAC Information

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BAC

Clone NameMSMg01-274D06
Chromosome6 (Build37)
Map Location 53,462,172 - 53,462,365
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274D06.T7 (MSMg01no274_d06.b1)MSMg01-274D06.TJ (MSMg01no274_d06.g1)
ACCAG413002AG413003
length726759
length of high quality
(start - end)
185 (122 - 306)64 (168 - 231)
definitionCHROMAT_FILE: MSMg01no274_d06.b1 PHD_FILE: MSMg01no274_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:42 2005CHROMAT_FILE: MSMg01no274_d06.g1 PHD_FILE: MSMg01no274_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCGCGGAATTC
AGCAAAGATCTCTACAGATGACCAGTGTGGCCACACACTCACGTCTGGCT
GAGGTTTCAGCTGACTGCCCTTTGGGATTTTTTAACTCCAGCCACAAACA
CGGATCTCCTTCATTTTTGACTATATAAGTCAACTGTGAGAGCCTCGGGT
AGGGTGATTTTTTTTCTAGCCCCCTTAAGCACTAAAAGTGCAGATAGGAG
GCTGGCTTTCTTGCCCCTTGTACTTCTTGTAGCTGGAGCCACAAGCTTCT
TGCAAGACATGGGTATGTTTTGTTAGGCATTCAGCGCATAAGCCAGTGTG
CACGTTATTTATTTTTCCTCCCCGCGCCCCATTATGGATCACTGCATCTA
TTACGGTTGCATTATGGGATTATGAAACATAGTATCTAGTACGGTTGCTC
AACGGTCTTAGCAAAGTCTCAACCTGGCGTCCCTCCATCTTTATACACGT
TTGTCACGTAACTCGGGCTTTCCCTCTTATCCTCATTTCTTCCTCTGTAA
CATGGGATAATGATAGTCCGGATCTCTTGATCGAAATATGGGAATCCCAT
GATAAGGTGCTTATCCAAACCCATCGCCTCACATCGCGTCTATTCCTTTG
AATCCTCACCTCCATCCGACCCACCGGCCTTTTCCTGCGTCATCTTCCCC
TTGATTTTACACTTCCTCCCTCACAT
TGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAAACTGGTTACCTAGAGTGGGTTGTGTA
AAGGGGTGGGAGGTGTACCCCAGAGAGCGAGTGTGTAGGATCTGTGGCTC
CAACAGTAAGCAGTAGTGTAAGCAGTCTTTCAGGCAGGCTAGCCTGGCTC
TACAAAACGTCTCATCTAAACATCTGTACAACTGCAGCCAGAAACCTGGG
AACCACATGAACAATGGGGTGAGGCCCTTTTTCCTCTACTGCCCCAAACA
TTGTTTCTCCTGCACCTTTGTTAGTCTGCGGTCCTTACTGCAAACCCTGA
GAAGGGTTTGTAGTTTCCCCCCTCCCCCCGCAGAACCTACTTTTATTATG
TGAAATGTATTATCGCCTAATATAAAAAAAGTATGTACCTCGTAGCAGAC
CTTCTGCTGTACGCATTGCCGCATTTTATCTGTTTCCTTTCTGTTGTGTT
GACCTCACTTCGTCCTGCTTCTTCATACCTTCCGTTCGCCTTCATTTCTC
ATTCTATCCTTTTCCCCCCTTTTGTTCTTATCTCCGCTTTCTCCCCCTTC
ATACATTGGCGTTCCCCCCCCATTTCATTAAACCGCCTTACCCCTCCCTT
ATTTCTCCCCTTCTCCCCTCGTCCCCCCCTTTTCCCCCCCCTTTGCCCTC
CCTTTTTACCCCCTATATCACTCTTTTTCCCCGTTCCCCTATCTTTTTCT
GTTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_d06.b1 MSMg01no274_d06.b1 CHROMAT_FILE:
MSMg01no274_d06.b1 PHD_FILE: MSMg01no274_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:42 2005
         (185 letters)



>mm_chr6_53462061_53462645
          Length = 585

 Score =  302 bits (156), Expect = 1e-86
 Identities = 181/194 (93%), Gaps = 10/194 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggattttttaactccagccacaaacacggatctccttcatttttgactatataagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttgggattttttaactccagccacaaacacggatctccttcatttttgactatataagtc 246

                                                                       
Query: 61  aactgtgagagcctcgggtagggtgattttttttctag-cccc------ctta---agca 110
           |||||||||||||||||||||||||| ||||||||||| ||||      ||||   ||||
Sbjct: 245 aactgtgagagcctcgggtagggtgactttttttctagtcccctttgagcttactaagca 186

                                                                       
Query: 111 ctaaaagtgcagataggaggctggctttcttgccccttgtacttcttgtagctggagcca 170
           |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 185 ctaagagtgcagataggaggctggctttcttgccccttgtacttcttgtagttggagcca 126

                         
Query: 171 caagcttcttgcaa 184
           ||||||||||||||
Sbjct: 125 caagcttcttgcaa 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)