BAC Information

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BAC

Clone NameMSMg01-274G02
Chromosome6 (Build37)
Map Location 13,622,251 - 13,622,541
singlet/doubletsinglet
Overlap geneB630005N14Rik
Upstream geneThsd7a, LOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168
Downstream geneGpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274G02.T7 (MSMg01no274_g02.b1)MSMg01-274G02.TJ (MSMg01no274_g02.g1)
ACCAG413124AG413125
length735732
length of high quality
(start - end)
685 (43 - 727)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no274_g02.b1 PHD_FILE: MSMg01no274_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:54 2005CHROMAT_FILE: MSMg01no274_g02.g1 PHD_FILE: MSMg01no274_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAATTGTCCCGGAAACAATACATAGTTAAACTTCTTGGGTATCAATA
CTCCTCGTTTCAAGATGAACACTTCTAGTAATGATATAGGAATGGGAATG
GGATGTGGCAAAGGATAAGATCCAAGAACAAACCAATTCTTAATGCTGTC
TTGAAGGTATACAAGTAGGACAGCTACAAACACCACCTCTGATATTCATG
TAACTTGAAGATGGTTGGGATCCTGCTAGTTTTAGAAATTCGCAAGTACT
ACTAAAAATGGGAGCTCCAATGATTTCTTAATGCCTTTGTCAGTGATTAA
AGTCTTAAATGTTAGATTATTCTTTCAACAGCACAGTATGATTTTAAGTT
ATTTTGTTATATGTGACAGTTTCCATTCTATGACAGAAAAGGTATTTCCA
AGCAATGGATTGTTCTAAATTAATATAATGCTATAAGAGATTTATGTGAC
AGAGGCTGTTTGAAACATTTACCTGTATTAATGAGGTATTAATATAGGTG
TGATTATTTTTACTACGGAAATACCAAGAAGAAACCAAAGGGCTTTTAAA
AAGTAAGAAAGAGACAACCTAATATTTGAAATTATTTATGTATTANATCT
ATTAAAGGGGAAACTTAAAGACTACTGTTATAAATATTGTCTGCAAAAGT
AAATAACTTCTTTACATAGCAGTGTAGCCAACATA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTATTT
AATGGGGTTATTTGAATTTCTGGAGTTCAGCTTCTTTGTATATGTTGGAT
ATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATTCTTTCCCAATCTGT
TGGTGGCCTTTTTGTCTTATTAACGGTATATTTTGCCCTACAGAAGCTTT
GGAATTTTATGAGGTACCATTTGTCAATTCTTGATCTTACAGCACAGGCC
CTTGCTGTTCTGTTTAGGAATTTTCCCCCTGTGCCCATATCTTCAAAGGT
TTTCCCCATTTTATTTTCTCACCCCCTCCTCCCGTCTCTGGTTTTAAGTG
GAGTTCTTTCATCCACTTAGACTTGAGCTTTTTACAAGGAGATAAGAATG
GATCAATTTGCATTCTTCTATATGATAATTACCAGTTGTGCCAACACCAT
TTGTTGAAAATGCTGTCTTTTTTTTCCTGTAAATGGAATACTTTGGTTTC
TCCATCTATGATAATTTAGAGTTTTGCTGGGTATAGTAGCCTGGGCTGGC
AATTGTGTTCTCTTAAGGTCTGTATAACATCTGTCTAGGCTCTTCTGGCT
TTCATAGTTTCTGGTGAGAAGTCTGGAGTAATTCTAATATGCCTTTATAT
GTTACTTGATCTTTTTTCCTTACTGCTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_g02.b1 MSMg01no274_g02.b1 CHROMAT_FILE:
MSMg01no274_g02.b1 PHD_FILE: MSMg01no274_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:54 2005
         (685 letters)



>mm_chr6_13621829_13622912
          Length = 1084

 Score =  534 bits (276), Expect = e-155
 Identities = 288/292 (98%), Gaps = 1/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 223 ttgggatcctgctagttttagaaattcgcaagtactactaaaaatgggagctccaatgat 282
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 423 ttgggatcctgctagttttagaaattcgcaagaactactaaaaatgggagctccaatgat 482

                                                                       
Query: 283 ttcttaatgcctttgtcagtgattaaagtcttaaatgttagattattctttcaacagcac 342
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 483 ttcttaatgcctttgtcagtgattaaagtcttaaatgtgagattattctttcaacagcac 542

                                                                       
Query: 343 agtatgattttaagttattttgttatatgtgacagtttccattctatgacagaaaaggta 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agtatgattttaagttattttgttatatgtgacagtttccattctatgacagaaaaggta 602

                                                                       
Query: 403 tttccaagcaatggattgttctaaattaatataatgctataagagatttatgtgacagag 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 603 tttccaagcaatggattgttctaaattaatataatgctataagagatttatgt-acagag 661

                                                               
Query: 463 gctgtttgaaacatttacctgtattaatgaggtattaatataggtgtgatta 514
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 662 gctgtttgaaacatttacctgtattaatgagatattaatataggtgtgatta 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space:   724950
Effective search space used:   724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)