BAC Information

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BAC

Clone NameMSMg01-274M08
Chromosome6 (Build37)
Map Location 90,940,220 - 90,940,504
singlet/doubletsinglet
Overlap genenone
Upstream geneV1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685
Downstream geneNup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274M08.T7 (MSMg01no274_m08.b1)MSMg01-274M08.TJ (MSMg01no274_m08.g1)
ACCAG413405AG413406
length741739
length of high quality
(start - end)
275 (424 - 698)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no274_m08.b1 PHD_FILE: MSMg01no274_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:22 2005CHROMAT_FILE: MSMg01no274_m08.g1 PHD_FILE: MSMg01no274_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTCTTACCCTCCTAGAACCTCCTTTTCTAAACCACTAGATACTGGACCC
TCTGGTGCTTCCTTCTCGCAACAACAGAGTCAATCCTGGGGACTCAGTGC
CAACAGGGGAAGGAGCCAAGTCCACTCTGGAACGCTAATGCTTTTCTTTC
TGCCACAAGGTGGCGCTGTGAAACAGCAGTCCAGAGGAGCGTGGTGAAGG
ATCTTGGGCCTGGTGGCTTCCTGCTGGCCTAGAGGTCCACACAATTTTAT
TCAGTGAGTCACCTCCTGTGGCCTCAGTAAGCTCTTGGTGGCCTAAGCCA
GGATATATTTTACCCGCCCCCCCCGCTAGTGGCAATGGGTGCCGAGACAG
GTGTGGGACAGTGGGCCATGCCAAAAAACTTGGTAAGGTTGAGTTCATAA
ACCCTGGCACCCTTATACCTGAGGACAGTAGGTGTTTCATCTGCTCCCGA
CCAGATTCCTGGTCTGTAACACATGACCGCAACTCCCCACTGAAAGAATG
TGACCACTAGTCACAGAGCACAGAGTTCTCCATGCTAATGAGATATCTAG
CTGGGACATGAGGGTTTAGCCAATAAGCTTCACTTCCTAGACATTTCTTC
CTGCATAAGATATTTTATCTCTGGCCCACCTTGAGGAAGTTTTATGCACC
TATTCTCCATGATGAACAATCAATAAACACTTTGGAACCAG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTGGGCATGCCTACAGAGAGGGGAAGAA
CGACAGTAGAGCCCTCCCCGGGATTCTCAAAATCACCAAGGTCTTTTCTC
TCAAGCTATTACATACACGTCACTCTAAATGAAATTTTTAATGTTATCCC
TTGTTACTAGGCTACTTGACATGCTTCAAAAAAAATCATGTTATCTTTAT
AAATCTTGTAACTATCCTGTGAAAAGCAGAGTCATGCCATATCCCATTTG
TATATGTAAAGTGTTTAATGTTTTGATTTTTTACATTTAAAATACTCATA
ATTTTGTAATACGTCCCAATCTATCCCCTGTCTCCAAAAGATGGTGCTGG
CTTCACTCCATCTTAAAAAAGAAAAGAACTTGGAGTCACGCTTGTATCTC
TTGTAGTGTTTGGGACTGAAGGGAAATCAAACTCTGAACCCTGGTACAGA
TCAGTGAGACTAGTGAAGGAAGGAGCAGTGCCCACATGCTCAGTGCCCAT
GTGGTTTCCCCACATCTGTGTGCCCTAGTAAGTTCTGCTTGGAGCTGACC
TCACATTTCTATCTCCACACTACCTCCTTACTCTCTGAGACTTGCCACCC
TGCTATGCCACAGAATGATGAATCGGGAGCCTTCAGGCATGGCCAGGACC
TGAAGTTGTTAACAGCTTGTGGATGTTGGAACGCACGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_m08.g1 MSMg01no274_m08.g1 CHROMAT_FILE:
MSMg01no274_m08.g1 PHD_FILE: MSMg01no274_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:22 2005
         (286 letters)



>mm_chr6_90940020_90940705
          Length = 686

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgggcatgcctacagagaggggaagaacgacagtagagccctccccgggattctcaaa 60
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 201 cctgggcatgcctacagagaggggaagaatgacagtagagccctccctgggattctcaaa 260

                                                                       
Query: 61  atcaccaaggtcttttctctcaagctattacatacacgtcactctaaatgaaatttttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaccaaggtcttttctctcaagctattacatacacgtcactctaaatgaaatttttaa 320

                                                                       
Query: 121 tgttatcccttgttactaggctacttgacatgcttcaaaaaaaatcatgttatctttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttatcccttgttactaggctacttgacatgcttcaaaaaaaatcatgttatctttata 380

                                                                       
Query: 181 aatcttgtaactatcctgtgaaaagcagagtcatgccatatcccatttgtatatgtaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcttgtaactatcctgtgaaaagcagagtcatgccatatcccatttgtatatgtaaag 440

                                                        
Query: 241 tgtttaatgttttgattttttacatttaaaatactcataattttg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttaatgttttgattttttacatttaaaatactcataattttg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)