TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGTTCCCTGCTGATGCTCTTTGTGGGCTCCCTTTGGATGGTGTA
TGGCTAGGTCTTTCAAACCAAGACAAGCAACTCCTAAAGTAAGAGCTCAG
AAGACAGTGTGGAAATATGTCACTAGATACCCCCCAAAACTGAAAATCAA
GGAGAATCATAGACACGTTAATCTACTTACTATTTTACTTCATGGACTGG
AATGAACATAATATTTTCGCCAATAACAGAATATGGCTTTATTTTTTAAT
GTTTATCTTGTCTATTTTTCTGAAAAAAAAAAGTGACAGTCATCATTTTT
TTTTCAGACTGTATTTCATTACTTGGATAGGTAGAATTGAAGTATTGTCT
TTTCAAAATTCACCCCTAGGAGTTGATATCAGGTAGTTTAATATTTTCTT
ATGTCTCCGAAGGGTTAACTAATACAGAGAAGCATGTTCTGTAGCACTGT
AAACTTTGCACTATGAGCCTCTGAACAGGACTGTTGTATATGCAAACCCT
TGCCGAACCCATAAGATGCCTCTATTGACTAAGGAGCAGCTCAGAGCAAT
GTTTGGCTAGGATGAGGCCATCAAGCTAGAATATGTTAGCTTCATGGAAT
TTATACAAAGCCCTAAAGTTTGAAAGCTTGACTGATGGAACGATCTGGTT
TGTTTTGTTTTTAAGGTCTCCTGTCACCAGAGG

TTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTA
AACACATGAAACTCAAGAAGAATGAAGACTGAAGTAN

Query= MSMg01no274_o09.b1 MSMg01no274_o09.b1 CHROMAT_FILE:
MSMg01no274_o09.b1 PHD_FILE: MSMg01no274_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:31 2005
         (689 letters)



>mm_chr6_43635956_43637042
          Length = 1087

 Score = 1129 bits (584), Expect = 0.0
 Identities = 662/688 (96%), Gaps = 6/688 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctggttccc-tgctgatgctctttgtgggctccctttggatggtgtatggcta 62
           |||||||||||| | | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctggtacacgtgctgatgttctttgtgggctccctttggatggtgtatggcta 263

                                                                       
Query: 63  ggtctttcaaaccaagacaagcaactcctaaagtaagagctcagaagacagtgtggaaat 122
           |||||||||||  |||||||| |||||||||||||||| |||||||||||||||||||| 
Sbjct: 264 ggtctttcaaaggaagacaagtaactcctaaagtaagaactcagaagacagtgtggaaa- 322

                                                                       
Query: 123 at-gtcactagataccccccaaaactgaaaatcaaggagaatcatagacacgttaatcta 181
           || |||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||
Sbjct: 323 attgtcactagataccccc-aaaactgaaaatcaaggagaaacataaacatgttaatcta 381

                                                                       
Query: 182 cttactattttacttcatggactggaatgaacataatattttcgccaataacagaatatg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cttactattttacttcatggactggaatgaacataatattttcgccaataacagaatatg 441

                                                                       
Query: 242 gctttattttttaatgtttatcttgtctatttttctgaaaaaaaaaagtgacagtcatca 301
            |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 442 actttatttcttaatgtttatcttgtctatttttctgaaaaaaaaa-gtgacagtcatca 500

                                                                       
Query: 302 tttttttttcagactgtatttcattacttggataggtagaattgaagtattgtcttttca 361
           |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 501 tttttttt-cagactgtatttcattacttggataggtagaattgaagtatcatcttttca 559

                                                                       
Query: 362 aaattcacccctaggagttgatatcaggtagtttaatattttcttatgtctccgaagggt 421
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 560 aaattcacccctaggagtcgatatcaggtagtttaatattttcttacgtctccaaagggt 619

                                                                       
Query: 422 taactaatacagagaagcatgttctgtagcactgtaaactttgcactatgagcctctgaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 620 taactaatacagagaagcatgttctgtagcactgtaaactttgcactatgagcctctgag 679

                                                                       
Query: 482 caggactgttgtatatgcaaacccttgccgaacccataagatgcctctattgactaagga 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caggactgttgtatatgcaaacccttgccgaacccataagatgcctctattgactaagga 739

                                                                       
Query: 542 gcagctcagagcaatgtttggctaggatgaggccatcaagctagaatatgttagcttcat 601
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcagctcagagcaacgtttggctaggatgaggccatcaagctagaatatgttagcttcat 799

                                                                       
Query: 602 ggaatttatacaaagccctaaagtttgaaagcttgactgatggaacgatctggtttgttt 661
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 800 ggaatttatacaaagccctaaagtttgaaagcttgacagatggaacgatctggtttgttt 859

                                       
Query: 662 tgtttttaaggtctcctgtcaccagagg 689
           ||||||||||||||||||||||||||||
Sbjct: 860 tgtttttaaggtctcctgtcaccagagg 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1087
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1077
Effective search space:   731283
Effective search space used:   731283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)