BAC Information

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BAC

Clone NameMSMg01-275L12
Chromosome6 (Build37)
Map Location 42,171,182 - 42,171,487
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144
Downstream geneGstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275L12.T7 (MSMg01no275_l12.b1)MSMg01-275L12.TJ (MSMg01no275_l12.g1)
ACCAG414091AG414092
length755756
length of high quality
(start - end)		310 (45 - 354)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no275_l12.b1 PHD_FILE: MSMg01no275_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:30 2005CHROMAT_FILE: MSMg01no275_l12.g1 PHD_FILE: MSMg01no275_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTGAAATGGCTTCTCTGTGACCTTAGACCACAATGTCACACCCCA
TGCCTTGTTGGTTTAGCTCTCAGTTAGAATGAAATCCCATGGAAGCTCTG
ACTGGTTGGCCTTGATCTAGGCCAGGTTATCAGGGGTGCCATCTGAGGTA
TTTGAGAGGCAGTAACCCACTTAGGATGCCAGGTGTGGAAAATGGTTGGG
AACATACAGCATGAATGCACCTGAATGGCTGGCCTACCCTTGGCCTCACC
CCTCCTAGTTTGTGCTCTTTTGCTTAAAAGGTTTCTCTATCTCAACCTTG
GCTATTTTTTTTTGGCCTCCCCATCCCAGCCATTTCCCTGATATTTCAGT
TTCTGAATAAAGACACTTTTGCTGGCTCGAACTTGGTTTTCATAGTGGAT
TATTTCTCAAATCTTCAGACCCTAACACATATATCATATAAAACCATATA
TATAACCAGAACATTGTATTTTGTCAATAAAGGCTGTTGGTAGATGAGTG
TAACTACAAAGAGTACCTATGCTCTACCCACCTTTAACCAGGAAGCAACC
TACTGAGGAACATTGCTTCTGAATACCCATGGAAGACCCTTTGTTCTGCT
AGGTGTGAGTCCTGAGCCAGACTGTGGGAGGAAAACTACTCTGATAACGA
AACTGCCTAAGACCAACTTCAGCTCTTAGCACCTCTCACCTTCCCTTTCA
CAGTT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGGGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATATTTCTTCTGGGCCCCCCCCCGAAGATGCCCCAACAGGTAAGAAG
GACACATGCTCCACTATGTTCATAGAAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTA
AACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCC
CTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_l12.b1 MSMg01no275_l12.b1 CHROMAT_FILE:
MSMg01no275_l12.b1 PHD_FILE: MSMg01no275_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:30 2005
         (310 letters)



>mm_chr6_42170978_42171687
          Length = 710

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctgaaatggcttctctgtgaccttagaccacaatgtcacaccccatgccttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattccctgaaatggcttctctgtgaccttagaccacaatgtcacaccccatgccttgt 451

                                                                       
Query: 65  tggtttagctctcagttagaatgaaatcccatggaagctctgactggttggccttgatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tggtttagctctcagttagaatgaaatcccatggaagctctgactggttggccttgatct 391

                                                                       
Query: 125 aggccaggttatcaggggtgccatctgaggtatttgagaggcagtaacccacttaggatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aggccaggttatcaggggtgccatctgaggtatttgagaggcagtaacccacttaggatg 331

                                                                       
Query: 185 ccaggtgtggaaaatggttgggaacatacagcatgaatgcacctgaatggctggcctacc 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 330 ccaggtgtggaaaatggttgggaacatacagcatgaatgctcctgaatggctggcctacc 271

                                                                       
Query: 245 cttggcctcacccctcctagtttgtgctcttttgcttaaaaggtttctctatctcaacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cttggcctcacccctcctagtttgtgctcttttgcttaaaaggtttctctatctcaacct 211

                 
Query: 305 tggcta 310
           ||||||
Sbjct: 210 tggcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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