BAC Information

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BAC

Clone NameMSMg01-276H04
Chromosome6 (Build37)
Map Location 52,752,784 - 52,753,093
singlet/doubletsinglet
Overlap geneJazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276H04.T7 (MSMg01no276_h04.b1)MSMg01-276H04.TJ (MSMg01no276_h04.g1)
ACCAG414630AG414631
length734744
length of high quality
(start - end)
317 (45 - 361)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no276_h04.b1 PHD_FILE: MSMg01no276_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:23 2005CHROMAT_FILE: MSMg01no276_h04.g1 PHD_FILE: MSMg01no276_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGTTTCACACATTCGCAGAAACTATCTGCAGCTGGCAAAAGCAC
ACTCCTGCTAGAGCATGAGACCCTCATAGTCAGCTGCTATGGACAACCTG
AAGCAGCCTGATATCACCACACATGGGATTAAAACAGAAGCATACTTAAA
ATACTTCTGTGGTTTTCTTTTGTTGTTGTCTTGTTGTTGTTTTGTCTTAT
TTTGTTTTTAAGACACTAAAATTTGGGACTGGAGAGATGGCTCAGTGGAT
AAGAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAATTCCCAGCAACC
ACATGGTGTTTTTCTTTCCTCCCCCCCCCCATCCGATGCCCTTGTCTGGT
GTGTCTGAAGACAGCTAGAGTGTACAACATATACACTGAATAAATAAGTG
AATAATAATTTTTTTAAAAAAAGAAAGAAACCAAAATTCCAGAATTGTCA
TTACAAACAACCACTGGGAGTCCATGTGATGGTTTGTCTATGATCGGTCC
AAGGAGTGGCACTATTAGAAGGTAAGGCCCTGTTGGAGTGGGTGTGACCT
TGTTGGAATAGGTGTGACACTGTGAGTATGGGCTTTAAGACCCTCATCCT
AACTGTTTGGAAGTCAGCCCTCGCTAGAGGCCTTCAGATGAAGACGTATA
ACTCTCAGCTCCTCCTGAACCATGTCTGCCTGGA
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACTAGGAAGTTCTGACAGGCTT
TACAGCCATGTTGCCTGGTGCTGGCACACAGTCAAGGCTTTTGCCCTCAA
TCCTGGTTGCTTTTCTTTGTCCCAGCAGAAGCCACATCCCAGACAGGCCA
GAAAGATGACAAGATGAGGCTCACACATTGGACTCTGCAGCCCAGACCCT
CTTTCTAAACCAAGGTCCATAGCTCACATGAGCCAGCGGTCCTCCATGTG
CACTCGCCAGGAAGTTTCTTCTGGCAGCAAGAACAGCCTGCTCTACGGGG
GCTAAGGTAGCCCATGTGTTTTCTTACCCCCCGCCGACGATGCTATGGGA
ATGGGAGGAGACCAGCTGACTCAGTGCTTCACACACCTCCATGGAGGAGG
GGATAGATGGATAGTCCACTCTGATGGATTTGCAGACCTGCCAAATGGGT
AGGTCTCCAAAGAACCCTTTTCTTCTCCCCCTCATCCCAACCCACTGCCT
AAAACGTGGCACATTAAAATCAGAGAAGGCCTTTCATCTTTGTGGGTATC
GCAGCAGCGAACTCATTTTAATGTCTTTTCCATGTGGCTCTAGTTTTAAC
AATTAAAATGATCCTCAGGCACACCCAGCTGGACTGCATCAAAGAGAGGA
TCTGCACGTGGGGGGGTGGGGCGACTTAACTTATTTGCCTCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_h04.g1 MSMg01no276_h04.g1 CHROMAT_FILE:
MSMg01no276_h04.g1 PHD_FILE: MSMg01no276_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:23 2005
         (291 letters)



>mm_chr6_52752722_52753411
          Length = 690

 Score =  485 bits (251), Expect = e-141
 Identities = 286/311 (91%), Gaps = 22/311 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   caactaggaagttctgacaggctttacagccatgttgcctggtgctggcacacagtcaag 60
           |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 372 caactaggaagtcctgacaggctttacagccatgttgcctggtgctgg-aaacagtcaag 314

                                                                       
Query: 61  gcttttgccctcaatcctggttgcttttctttgtcccagcagaagccacatcccagacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcttttgccctcaatcctggttgcttttctttgtcccagcagaagccacatcccagacag 254

                                                                       
Query: 121 gccagaaagatgacaagatgaggctcacacattggactctgcagcccaga---------- 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 253 gccagaaagatgacaagatgaggctcacacattggactctgcagcccagacccctgcatc 194

                                                                       
Query: 171 -----------ccctctttctaaaccaaggtccatagctcacatgagccagcggtcctcc 219
                      ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 193 caaagtgaattccctctttctaaaccaaggtccatagctcacatgagccagcggccctcc 134

                                                                       
Query: 220 atgtgcactcgccaggaagtttcttctggcagcaagaacagcctgctctacgggggctaa 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 atgtgcactcgccaggaagtttcttctggcagcaagaacagcctgctctacgggggctaa 74

                      
Query: 280 ggtagcccatg 290
           |||||||||||
Sbjct: 73  ggtagcccatg 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)