BAC Information

Click to search

BAC

Clone NameMSMg01-276J14
Chromosome6 (Build37)
Map Location 42,612,841 - 42,656,351
singlet/doubletdoublet
Overlap gene3321401G04Rik, LOC100039918
Upstream geneTrpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487
Downstream geneGA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276J14.T7 (MSMg01no276_j14.b1)MSMg01-276J14.TJ (MSMg01no276_j14.g1)
ACCAG414738AG414739
length768790
length of high quality
(start - end)		135 (45 - 179)266 (77 - 342)
definitionCHROMAT_FILE: MSMg01no276_j14.b1 PHD_FILE: MSMg01no276_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:34 2005CHROMAT_FILE: MSMg01no276_j14.g1 PHD_FILE: MSMg01no276_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,612,841 - 42,612,972)(42,656,097 - 42,656,351)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCAAAACTAAGTTAATTAATCTTGAACTAACTTAGTTTCTCAGAA
TCTGATATGTCAGATCTACTAGGCAAATGCATGATAAACAAATCATTTTA
ATCACCAGACCAACGTGACATCTGTAACTTCATTCACAGTTTCATGCACA
ATCTTATGCATGATGAAGATACTGAGATGCAAAAGTGGTTACAGTGTAAA
ATCTGTAACTCATTTATGATCCATTTCCGAATCCATGAAAANGATTGGAA
AGAAAGCTTAAGGAATAGAATGCTTAACTAATCATGGTCCAGCCCCTTTG
GTTCAATCCAACCCCCCCAAATAAAAGGTCCCCAAGGCCAAAAAGGGGGA
AAGCTACCCCCTCTTGTGCCAAAAAAACAAAAACCTTCTTTTGGTTTTTT
TTTGAAAAATATAAACAATTTTTGGTTTTTCCTCCCCCAATTTTTTATGA
AAATTAAAACCCAACCCCTCCTACAGGTCTCCCCCTAATAATTGAGAATT
TTTGAGCAAGGGGGGGTTCTTTTTTTTTTCCCCCCACGCCCCAAAAAAAA
CTTTTTTTTCCCCCACAACTTAAAAAAGGGGCTTTTATTTTTGGCACCCC
CTTTTATCCCGGCCTCTTGTGTGTTTAATAAAAGTTATTTTTTTTTTTCC
CAAAAGGCCCCCCTAAAAAAAAGAAAAAATTTTTTTTTTTTTGTGAAAAA
AACGCGCCCCCTCTTTAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCACTCACACACATGCACGCAAA
CACATATACACAAAACAAAATAAAACAACCCTTTTAAAAACAAAAGGTTT
CATGTAACTCTTTCTCTTCAAATATATTTTGGTGGCAAGCATAGAATTTA
ACTTCTAACAGTAAGCTAGCTGAAGTCTCTAGAATATCAGTGTATCTCTA
GTGTGTATGTCATGGCATTTATTAATAGCACACCGAGACAAGCATTATTT
ACATTTATGTAAGCTAGTATTGGTCTATACTTATCGCTTTCTGTACTGTT
CTGATCTGCCATTGTTATCATCTCACAATACCATGCGGTATGGTTTTTCC
TTGGGTCTGTTAAAGAAAATCTGCACCAATATTGCAATTATCTAAATCCT
TGAATTGGAAAAAACCTTCTGGGAACTTGAAATGCAAGGCCATTTTTAAG
GCTTGTTTGGGTTCAAATTACCTTTATTAAAAAGGGAAAAGGCTTTTCCT
TAAAACCCCCTTGGAAGGCTTTTAATTTGGGAAGGCTAACCCCAATAAAA
GCCACCTTTCTTTTTTTTAAAAAAACAATTTTTAGGGGGTAATTAAGGTT
TTCCCTAAGGAAATCCCGTTTTTGATAAAATTGGGGCAATAGGTTTTCCN
CATTTATTTAAATAAAAATAAAAAACCCCCCTTTTACTCAAAAAATTTTT
CCAAAATTCCCTAATGGGGGTTCAAAACTTTCCTCTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_j14.b1 MSMg01no276_j14.b1 CHROMAT_FILE:
MSMg01no276_j14.b1 PHD_FILE: MSMg01no276_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:34 2005
         (135 letters)



>mm_chr6_42612638_42613172
          Length = 535

 Score =  248 bits (128), Expect = 1e-70
 Identities = 131/132 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagcaaaactaagttaattaatcttgaactaacttagtttctcagaatctgata 63
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagcaaaactaagttagttaatcttgaactaacttagtttctcagaatctgata 263

                                                                       
Query: 64  tgtcagatctactaggcaaatgcatgataaacaaatcattttaatcaccagaccaacgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtcagatctactaggcaaatgcatgataaacaaatcattttaatcaccagaccaacgtg 323

                       
Query: 124 acatctgtaact 135
           ||||||||||||
Sbjct: 324 acatctgtaact 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 535
Length adjustment: 8
Effective length of query: 127
Effective length of database: 527
Effective search space:    66929
Effective search space used:    66929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no276_j14.g1 MSMg01no276_j14.g1 CHROMAT_FILE:
MSMg01no276_j14.g1 PHD_FILE: MSMg01no276_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:34 2005
         (266 letters)



>mm_chr6_42655859_42656524
          Length = 666

 Score =  453 bits (234), Expect = e-132
 Identities = 253/266 (95%), Gaps = 11/266 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcactcacacacatgcacgcaaacacatatacacaaaacaaaataaaacaaccctttta 60
           ||||||||||||||||||| |||||||           ||||||||||||||||||||||
Sbjct: 493 tgcactcacacacatgcacacaaacac-----------acaaaataaaacaaccctttta 445

                                                                       
Query: 61  aaaacaaaaggtttcatgtaactctttctcttcaaatatattttggtggcaagcatagaa 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 aaaacaaaaggtttcatgtaactctttatcttcaaatatattttggtggcaagcatagaa 385

                                                                       
Query: 121 tttaacttctaacagtaagctagctgaagtctctagaatatcagtgtatctctagtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttaacttctaacagtaagctagctgaagtctctagaatatcagtgtatctctagtgtgt 325

                                                                       
Query: 181 atgtcatggcatttattaatagcacaccgagacaagcattatttacatttatgtaagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgtcatggcatttattaatagcacaccgagacaagcattatttacatttatgtaagcta 265

                                     
Query: 241 gtattggtctatacttatcgctttct 266
           ||||||||||||||||||||||||||
Sbjct: 264 gtattggtctatacttatcgctttct 239


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |