BAC Information

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BAC

Clone NameMSMg01-277K12
Chromosome6 (Build37)
Map Location 34,667,439 - 34,835,802
singlet/doubletdoublet
Overlap geneCald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184
Downstream geneStra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277K12.T7 (MSMg01no277_k12.b1)MSMg01-277K12.TJ (MSMg01no277_k12.g1)
ACCAG415495AG415496
length740742
length of high quality
(start - end)
315 (383 - 697)297 (385 - 681)
definitionCHROMAT_FILE: MSMg01no277_k12.b1 PHD_FILE: MSMg01no277_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:50 2005CHROMAT_FILE: MSMg01no277_k12.g1 PHD_FILE: MSMg01no277_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,667,439 - 34,667,753)(34,835,506 - 34,835,802)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGTTTCCTGGAACTTCCAGGGCAAAGTAGAAAGGCAAATGGGTGGCT
TAGAAAGACAGAAGTTTGTTACCCGTCTGAAAGTAACATCAGTGGGGACT
CACTCTAGGAGACCACTGGGAAGGGTCTGTCCTGGCCTCTTCTAGCTTCT
GATGGCCCTAGATGTCCCTTGGCTCATGGCCTTGTGTCTCAGTAGTTTCA
CATGCCATTCTGGATGTCTCTTTCCATTGCCCTCCCCCCATGCTTGTCTG
TGTTTGTGTTCAGAGGACACCAGTTGTACTGGATTGCATACCACTCTGAT
GACCTCATCTCTTTTTTTCTTACCTCTGCCCCGACCTCCCATTGAAGTCA
CGGAGAGGCTTAGGGTTAGGAGATCAACAGAGCTCTGTGGGGAATGCAAT
TCAGCTCATTTGTAAGTGAGCAGATCTCCTAGAATTACATGACACTCAAC
AGGCCCAGCCAGACCTTTAAAGTTTGCTAATGTCCCCACAAAATGGGCAA
ACATCTTGCATCCCAGAGGGGGCTATTAGCTAGTCTCTTGAGTATTTCCT
AACCACAAAAGTTCCCTAGTCCTAAGAACCGGAAGGGGCTTTTCTCCTGA
AATGAAGGACACCCAGAAAGAATTTGTTAACTCTGTTAACTTCAAGGCAT
AGAGTTGTACAGTCCCAGATAAAGCTTAGGTCTGCAAAGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCTGTGACGAGAATGCTGTGTACA
GCATCGGCGAGGACCGCAAGGTACGTGCCAACAGCAGTGGTGGCAGCTGG
ACCGTCTGTGAGCCCTGGGACTGTGGCCTTCTTTCTGCCTCCATTTTAGC
TTCCGCAAAATAAGGATACATACAGGTCTACCTCAAAGCATCTTCGTGGG
GTTCAGTGAGTGCAGTGGGGTTTGGCTGTTCTCGTAGATGGGAATTCCAT
AACCTTCTTCCTAGTTGTAGCAAAACTGACTCATGTCACCAGAGAGGGAG
CCACATGTGGGGAATATATTCTTTCGCCGCCCGGGGTTGGTCATGGTCAC
AAGACAGTGCATGGGGTTTGCTGACGAGTTGGAGTGAGGATCCTAATGGG
AAACAGATCCGAGCAGAGCCCAGGGAAGTAAAAAGTAAGCAGACCCCTGT
CTCCTAATCACTATAGACAAGGCCCTTGTAGATTTCCTCTGTGCAAAGGC
GTGTTAGGAAGTGGGAATGACAGTGGCCTTGCACTGAAGTCGGGGGTACG
AGAAATAAGTAGGAGAACGACTTAGCTGTCTTATATACCCTCCTAAACCT
GTGGGATTTTATACTGAAAACAGTGACTACAAAACCGTGTCTGTCTGTCT
GTGTGTCTGCATGCCTGCATGTATGTACGTATGCATGTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_k12.b1 MSMg01no277_k12.b1 CHROMAT_FILE:
MSMg01no277_k12.b1 PHD_FILE: MSMg01no277_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:50 2005
         (315 letters)



>mm_chr6_34667239_34667953
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacctcccattgaagtcacggagaggcttagggttaggagatcaacagagctctgtgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacctcccattgaagtcacggagaggcttagggttaggagatcaacagagctctgtgggg 260

                                                                       
Query: 61  aatgcaattcagctcatttgtaagtgagcagatctcctagaattacatgacactcaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgcaattcagctcatttgtaagtgagcagatctcctagaattacatgacactcaacag 320

                                                                       
Query: 121 gcccagccagacctttaaagtttgctaatgtccccacaaaatgggcaaacatcttgcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccagccagacctttaaagtttgctaatgtccccacaaaatgggcaaacatcttgcatc 380

                                                                       
Query: 181 ccagagggggctattagctagtctcttgagtatttcctaaccacaaaagttccctagtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagagggggctattagctagtctcttgagtatttcctaaccacaaaagttccctagtcc 440

                                                                       
Query: 241 taagaaccggaaggggcttttctcctgaaatgaaggacacccagaaagaatttgttaact 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagaacaggaaggggcttttctcctgaaatgaaggacacccagaaagaatttgttaact 500

                          
Query: 301 ctgttaacttcaagg 315
           |||||||||||||||
Sbjct: 501 ctgttaacttcaagg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no277_k12.g1 MSMg01no277_k12.g1 CHROMAT_FILE:
MSMg01no277_k12.g1 PHD_FILE: MSMg01no277_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:50 2005
         (297 letters)



>mm_chr6_34835306_34836002
          Length = 697

 Score =  551 bits (285), Expect = e-161
 Identities = 294/297 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttggtcatggtcacaagacagtgcatggggtttgctgacgagttggagtgaggatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 497 ggttggtcatggtcacaagacagtgcatggggtttgctgacgagttggaatgaggatcct 438

                                                                       
Query: 61  aatgggaaacagatccgagcagagcccagggaagtaaaaagtaagcagacccctgtctcc 120
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 437 aatgggaaacagatccgagcagagcccaaagaagtaaaaagtaagcagacccctgtctcc 378

                                                                       
Query: 121 taatcactatagacaaggcccttgtagatttcctctgtgcaaaggcgtgttaggaagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 taatcactatagacaaggcccttgtagatttcctctgtgcaaaggcgtgttaggaagtgg 318

                                                                       
Query: 181 gaatgacagtggccttgcactgaagtcgggggtacgagaaataagtaggagaacgactta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaatgacagtggccttgcactgaagtcgggggtacgagaaataagtaggagaacgactta 258

                                                                    
Query: 241 gctgtcttatataccctcctaaacctgtgggattttatactgaaaacagtgactaca 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gctgtcttatataccctcctaaacctgtgggattttatactgaaaacagtgactaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)