BAC Information

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BAC

Clone NameMSMg01-277L03
Chromosome6 (Build37)
Map Location 127,158,939 - 127,280,833
singlet/doubletdoublet
Overlap geneEG243642, LOC100043578, EG640703
Upstream geneLOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11
Downstream geneLOC100043848, Parp11, Efcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277L03.T7 (MSMg01no277_l03.b1)MSMg01-277L03.TJ (MSMg01no277_l03.g1)
ACCAG415523AG415524
length732735
length of high quality
(start - end)
234 (133 - 366)471 (131 - 601)
definitionCHROMAT_FILE: MSMg01no277_l03.b1 PHD_FILE: MSMg01no277_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:53 2005CHROMAT_FILE: MSMg01no277_l03.g1 PHD_FILE: MSMg01no277_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,280,602 - 127,280,833)(127,158,939 - 127,159,409)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCTTTCTTGGTTTCCAAAGAATAGGAGAGAACAGCCTTGTCTCAACTGA
AGATGGCACGCTGATTCCTGTTATCCGCAGAGGCCAGGCCAGAACCCTTT
CACTTCTTTGGGGTGATACCCTGGCCGGCTTGCCCTCTGCTGGGGTTCTG
GTGGTGATGTCACGGAATGACTAATGGGAGCGGGACTTGCAAGCATCCTG
ATAGCAGAGGGGTCTCCCAGACCGGGGCCCCTGGAAGCGTGGGGCGGCAG
CCCAGGAATGCACCCTAGCCGGCCTGAAGCCTGCACTCTCCCAGGCCCTA
CGGCGGGCTCCCGGTTATTTGTCTCCGCCTTGGATCTTTTGCTTCCCTTC
GCAGGCCTTACCTGCCTAAACAAACAGCCTGAGCCTCCCACCCGCTGCAC
GCCCGCCCCCGGGACAGGAAACAAGCGGTGACAGCTCCCGGCCCGCGCCT
GCCGCCGACCCGCAGCCGGGTTAGCAACCCGGCGCCGCGGCGCTGCGATT
GGCTGAGCGTGGCCCAAGAGGCGCCGCGCCGCTCCAATGGGCGGCCGCCG
GAGGACGCGGGGAGCGAGGTTTTACATGCCTGTGGTATTTGCTCAGAGGG
GCATGACCACTTTGGGCAAGTCTTTAAATGTGAGTCAGCTTTCGGCTGAT
CCCTGGGAAAAATTCCTTCGGTGTTGCCAGGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTGCTGAGCACAGATTCCTGCTA
GTTTGTGGCATTTAAATGGAGGACACCACGGTGAGACACCCTGTGGAATA
TAACCCACCAGCTGGCACCCTTGGGGTAGAAGGGCCTACTTCCCACAGAT
ATGCAGGGAGTAGTCAGCCAAGGAAAGCAGGACCTAGGCTGTCTTCGTGT
GGAAGCTCAGTCTTCACACTCAGTCAGGCAGGTGACTTCCTCTGTCTGGC
CCTCAGTGCTCTCATCCAGGAAGTAGGAAGATGAACCGTAGAGTAGTGTG
AATTAAATTCACATCTTTACCATTTCTGAATTCCCCCCTCTGCTTTGCTA
GCAACTGGTTCCAGTTAGGATTGAGAGTAGATAAGCACACCTTTTTAGTC
ATCAAACTACCCTTTCAACTTTAATCCCACTATTCCAGATGAAGTGTCTT
AACCAGACCTCTTGGAGCTGCTTTTAGGAAAGCGGACACCTAACTATGAT
ATTGCCTTGGAATCCAAGGGTCTTCCAACCAAGGATATGCATGGAGGGTT
CATTACATCTTGCCTCCTGCTGCCTCAGGCTCTTACAGAAGGAAGTTATG
AAGAATGCCTGATGGACCCTGGAACACAGATTATCACCTACTTTAGGAGT
GAAACTGCCTACTGGCATGTGAGGCACGACCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_l03.b1 MSMg01no277_l03.b1 CHROMAT_FILE:
MSMg01no277_l03.b1 PHD_FILE: MSMg01no277_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:53 2005
         (234 letters)



>mm_chr6_127280402_127281035
          Length = 634

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccaggccagaaccctttcacttctttggggtgataccctggccggcttgccctctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gccaggccagaaccctttcacttctttggggtgataccctggccggcttgccctctgctg 373

                                                                       
Query: 61  gggttctggtggtgatgtcacggaatgactaatgggagcgggacttgcaagcatcctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gggttctggtggtgatgtcacggaatgactaatgggagcgggacttgcaagcatcctgat 313

                                                                       
Query: 121 agcagaggggtctcccagaccggggcccctggaagcgtggggcggcagcccaggaatgca 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agcagaggggtcgcccagaccggggcccctggaagcgtggggcggcagcccaggaatgca 253

                                                               
Query: 181 ccctagccggcctgaagcctgcactctcccaggccctacggcgggctcccgg 232
           |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccctagcctgcctgaagcctgcactctcccaggccctacggcgggctcccgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no277_l03.g1 MSMg01no277_l03.g1 CHROMAT_FILE:
MSMg01no277_l03.g1 PHD_FILE: MSMg01no277_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:53 2005
         (471 letters)



>mm_chr6_127158739_127159609
          Length = 871

 Score =  841 bits (435), Expect = 0.0
 Identities = 462/471 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagacaccctgtggaatataacccaccagctggcacccttggggtagaagggcctact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgagacaccctgtggaatataacccaccagctggcacccttggggtagaagggcctact 260

                                                                       
Query: 61  tcccacagatatgcagggagtagtcagccaaggaaagcaggacctaggctgtcttcgtgt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 261 tcccacagatatgcagggagtagtcagccaaggaaagcaggacccaggctgtcctcgtgt 320

                                                                       
Query: 121 ggaagctcagtcttcacactcagtcaggcaggtgacttcctctgtctggccctcagtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagctcagtcttcacactcagtcaggcaggtgacttcctctgtctggccctcagtgct 380

                                                                       
Query: 181 ctcatccaggaagtaggaagatgaaccgtagagtagtgtgaattaaattcacatctttac 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ctcatccaggaagtaggaagatgaaccgtagagcagtgtgaattaaattcacatctttac 440

                                                                       
Query: 241 catttctgaattcccccctctgctttgctagcaactggttccagttaggattgagagtag 300
           ||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagcctgaattcccccctctcctttgctagcaactggttccagttaggattgagagtag 500

                                                                       
Query: 301 ataagcacacctttttagtcatcaaactaccctttcaactttaatcccactattccagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataagcacacctttttagtcatcaaactaccctttcaactttaatcccactattccagat 560

                                                                       
Query: 361 gaagtgtcttaaccagacctcttggagctgcttttaggaaagcggacacctaactatgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagtgtcttaaccagacctcttggagctgcttttaggaaagcggacacctaactatgat 620

                                                              
Query: 421 attgccttggaatccaagggtcttccaaccaaggatatgcatggagggttc 471
           | ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 actgccttggaatccaagggtcttccaaccaaggaaatgcatggagggttc 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)