Query= MSMg01no277_m19.b1 MSMg01no277_m19.b1 CHROMAT_FILE:
MSMg01no277_m19.b1 PHD_FILE: MSMg01no277_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:00 2005
(317 letters)
>mm_chr6_31144564_31145280
Length = 717
Score = 582 bits (301), Expect = e-171
Identities = 313/317 (98%)
Strand = Plus / Minus
Query: 1 gagagcatgcacgtacatgcacgcaaaatacttaaacacatataaagaaaattaaaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gagagcatgcacgtacatgcacgcaaaatacttaaacacatataaagaaaattaaaaatc 366
Query: 61 agagcagtctcagagctttgctccagatggagaattggttgtgtatacccattcaacgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agagcagtctcagagctttgctccagatggagaattggttgtgtatacccattcaacgca 306
Query: 121 cagtcattgctgtattgtgtgatgttttgtatacagtttaattttgatttaattatcaga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 305 cagtcattgctgtattgtgtgatgttttgtatacagtttaattttgatttaactatcaga 246
Query: 181 acaaagttggtagatctgtaggacagatttaagaaggaaactgccttttaaatttttatt 240
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 245 acaaagttggtagatctgtaggacagatttaagaaggaagctgccttttaaattttaatt 186
Query: 241 atttatttgtcctttcattcattcatttttgcctttttgagacaggatttctctctatta 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atttacttgtcctttcattcattcatttttgcctttttgagacaggatttctctctatta 126
Query: 301 tagacctggctattctg 317
|||||||||||||||||
Sbjct: 125 tagacctggctattctg 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_m19.g1 MSMg01no277_m19.g1 CHROMAT_FILE:
MSMg01no277_m19.g1 PHD_FILE: MSMg01no277_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:00 2005
(246 letters)
>mm_chr6_31006942_31007584
Length = 643
Score = 356 bits (184), Expect = e-103
Identities = 233/254 (91%), Gaps = 12/254 (4%)
Strand = Plus / Plus
Query: 1 acactaacacttgggctctttgacc-------ttctttttttttttttttcatcccca-a 52
||||||||||||||||||||||||| || |||||||||||||||||| | || |
Sbjct: 194 acactaacacttgggctctttgacctttttttttttttttttttttttttcat-ctcaga 252
Query: 53 tctgttaaatttcatgtgtactgaaaatcataccgttaggtctaaagatggcttcagaga 112
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 253 tctgttaaatttcatatgtactgaaaatcataccgttaggactaaagatggcttcagaga 312
Query: 113 tgccagggacaggaaggatactgcatgacccttctcangagtgttcgactatagatggac 172
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 313 tgccagggacaggaagg-tactgcatgacccttctca--agtgttcgactatagatggat 369
Query: 173 atgcatttgcaaaggctgtagttactgctcttgttgctatgacaacgccattgctgttaa 232
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 370 gtgcatttgcaaaggctgtagttactgctcttgtcgctatgacaacgcccttgctgttaa 429
Query: 233 agagttttgttggc 246
|| |||||||||||
Sbjct: 430 agggttttgttggc 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 643
Length adjustment: 9
Effective length of query: 237
Effective length of database: 634
Effective search space: 150258
Effective search space used: 150258
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
