BAC Information

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BAC

Clone NameMSMg01-277N07
Chromosome6 (Build37)
Map Location 79,517,857 - 79,518,171
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384440, LOC621815
Downstream geneLOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277N07.T7 (MSMg01no277_n07.b1)MSMg01-277N07.TJ (MSMg01no277_n07.g1)
ACCAG415622AG415623
length729736
length of high quality
(start - end)
319 (44 - 362)240 (131 - 370)
definitionCHROMAT_FILE: MSMg01no277_n07.b1 PHD_FILE: MSMg01no277_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:02 2005CHROMAT_FILE: MSMg01no277_n07.g1 PHD_FILE: MSMg01no277_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATTAATTAACAGGAACTTTCAGAAATATGTTATTAATATAACCCAC
ATTGAAAGCATACTATATATTGCCTATTTTATTTTCCTGGATAAATCAGT
GAATTTATTTAAGGAATGATGAGATACAAACATCAATATAATGTTTGTTA
AGTGTTTAGTCTTGAAAATATTGAGTGAGATAACTCAGCAAGTATGGACC
TTTACTGTTAAGCCTTACAATGCCTCATTTGTTTGTTTGTTTATATCCCA
AAGGCTGCCCCACTCCTGGTCATCTCATCCCACAGAGCCCTCCTCCATTC
CTCTCTCCTCCTCTTCTTTGGGTCGCCACTCACTGGCTCCTAACCTCTCT
GCAGGGTTAGTTCAGATCATCCTCTTCCACTGAGAACAGGCAATGAAGCC
CAGATGGGGAAGGGATTCTTCAGTCAGGCTACAGCTTTAAGGGCTTACTT
CTTAACTCCAGGTGTGTTTTTATTTTTTGAGATTCTAATAAAATTCTATA
ATTTCTCTCTTGTTCAGCTCAGATTTCGGCAATCCTGTTGGTGAGACTTT
ATGGGTGTAACTTGTAGTACTTTTATTGGTTGACAATTTAATTGATTAGA
CAATAAATTTTCATTCCTTACTGTGTTCTCTTAACCACCTGTCCTATCCT
TCTGGAAGTGTCTCTCTCAGCTAATCCCC
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAATACCAATATTCTTCAAACTA
TTCCACAAAATAGAAACAGATGTAACCCCAACAATTCATTCTATGATGCC
ACAATTATGCTTATACTTAAACACAGAAAGACCCAAGAAAGAATGAGAAT
TTCAGACCAATTTCCCTTATGAATATCGATGCAAAAATACTAAATAAAAT
TCCTGAAAACTAAATCCAAGAACACATCAAAACAATCATCCATTATGATC
AAGTTGGCCTCATCCCAGGGATGCAGGGGTGTTTCAATATATGGAAATGC
ATCAACATAATACACTATATTTTTTAACTCACCCCACCCCGAGCTCACAT
AATCATCTCATTAGATGCTGAGAAAGCTTGTGACAAATTTCAACACTTCT
TCATGGTAAAAGTCTGGGAAAGATCAGGATTCAAGGCCCATACCTAAACA
TAGTTAAAACAACATACAGGAAACCAGTAGCCAACATCAAAGTATATGGA
GAGAAACTTGAAGCAATGCCACTAAAATCAAGGACTAGACAAGGCTGCCC
ACTCTCTCCTACCTATTCAACACAGTACTCAAAGTCCTAGCCAGAGCAAT
TAGACTACAATAAGAGGCCAAATGTATACCACTTGGAAAGGAAGTAATCA
CAGTATCACTGTTTGCAGATGTTATAATAGTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_n07.b1 MSMg01no277_n07.b1 CHROMAT_FILE:
MSMg01no277_n07.b1 PHD_FILE: MSMg01no277_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:02 2005
         (319 letters)



>mm_chr6_79517653_79518371
          Length = 719

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattaattaacaggaactttcagaaatatgttattaatataacccacattgaaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcaattaattaacaggaactttcagaaatatgttattaatataacccatattgaaa 264

                                                                       
Query: 65  gcatactatatattgcctattttattttcctggataaatcagtgaatttatttaaggaat 124
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatactatatattggttattttattttcctggataaatcagtgaatttatttaaggaat 324

                                                                       
Query: 125 gatgagatacaaacatcaatataatgtttgttaagtgtttagtcttgaaaatattgagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatgagatacaaacatcaatataatgtttgttaagtgtttagtcttgaaaatattgagtg 384

                                                                       
Query: 185 agataactcagcaagtatggacctttactgttaagccttacaatgcctcatttgtttgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 agataactcagcaagtatggacctttactgttaagccttacaatgtctcatttgtttgtt 444

                                                                       
Query: 245 tgtttatatcccaaaggctgccccactcctggtcatctcatcccacagagccctcctcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtttatatcccaaaggctgccccactcctggtcatctcatcccacagagccctcctcca 504

                          
Query: 305 ttcctctctcctcct 319
           |||||||||||||||
Sbjct: 505 ttcctctctcctcct 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)