BAC Information

Click to search

BAC

Clone NameMSMg01-278L24
Chromosome6 (Build37)
Map Location 66,394,308 - 66,394,503
singlet/doubletsinglet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278L24.T7 (MSMg01no278_l24.b1)MSMg01-278L24.TJ (MSMg01no278_l24.g1)
ACCAG416297AG416298
length740766
length of high quality
(start - end)
316 (46 - 361)195 (77 - 271)
definitionCHROMAT_FILE: MSMg01no278_l24.b1 PHD_FILE: MSMg01no278_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:11 2005CHROMAT_FILE: MSMg01no278_l24.g1 PHD_FILE: MSMg01no278_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATAATAAAAACAATTTACAGCAAACCAA
CAGCCAATATTAAATTAAATGGAGAGATACTTGAGCAATCCCACTAAAAT
CAGGGAAAAGAATACCCACTCTCCCCATATCTATTCAGTATAGTACTGGA
AGTTCTAACTAGAGCAACATGACAACAAATGGACATCAAGCGGGTACAAA
TTGACTAAGAAGTCAAGGTATCACTATTTGTAGATGATATGATAGTATAC
ATAAGTGACCCCCAAAATTCTACCAGAGAACTTCTGATAAACAACTTCAT
CAAAGTGGCTGGTTNATAATTCCCCTNACTAACCCATTAGCATTCTTTTA
TACAAATGATAAACTGATTGAGAAAGAAAATAAGGAAACAACACCCTTCA
CAATAATCACAAATAGTATAAAATATCTTAACTCTAACAAAACAAGAACT
TCTAGTCTCTCAAGAAAGAAATTGAAGAAGATCTCAAAAAATTGAGAGGT
TTCCCATGTTCATGGATTGGCAGAATTAACATAGTAAAAATGGCCATCGT
ACCAAATCTACAGATCCAATGCAATTCCCATCAATTTTCCAACACAATTC
TTCAAAATCATGGAAAGAACAATTTTCAAATTCATCTGGAAAAAAAAACG
GAATCGCAAACACAATTTTTTGTTCGTTTGTTTTTGTTTT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATGAACTGCGAACTGCGATGAA
GTACAGTAGGATCTGCCCACCTCTTCAAGTGCTGACTCAAAAATGCAAAA
CGTTTCCCCTTTCTCCTCTCTGTCTCTTACTTTGTGGGGCTGGCCAGAAC
CTAAGCGCACTTTCCCTGCTCCTCTTGGCTTCCTTGCTTTTCTCTGAAGC
CCTTGCAACACTCTTTGTTGTGGGCCGGCTGGGTCTCTGCCGGTTGAGCT
GAGAGGACATGACTGAAATAAAGAAAAAATATTTTATTTAAAAAAAAAAA
AGAAACAACACCCCCCGCGGNGNNAGTTTTTTGGATGGGCTTCCCCCAAA
ACGGGGACCCCCCCGGGAAAAAGAGGGNNAAAAAAGTGTAATAAAAAAAA
AAAAACGTCCCCGCCCCCATAAAAAAAAAAAAAAAAAAAAAAAACACCTC
TTCCCGCGGGTGGGGGGGGGGGGAAAAAATTTTTTCTTTGGGGGGGGGCC
CCCCCCCCCCCCCCCCCCTTTTTTTTAAAATAGATATTAATTCTCCCCAC
AAAAATTTGCGCGGTGTGTGGTGTTCCCTCCCCCCTCCCCCCCCCTCAAA
TATTTTTTTATATTAAAAAAATTCCGCCTCCCTCCTTTGGGGTTTATATT
TAGATAGTTACGTCTCCGATCCTCGGCGCGTCTCCCTCTTCGATAAAATA
CCTATATATTTTGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_l24.g1 MSMg01no278_l24.g1 CHROMAT_FILE:
MSMg01no278_l24.g1 PHD_FILE: MSMg01no278_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:11 2005
         (195 letters)



>mm_chr6_66394108_66394703
          Length = 596

 Score =  340 bits (176), Expect = 2e-98
 Identities = 191/196 (97%), Gaps = 1/196 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatgaactgcgaactgcgatgaagtacagtaggatctgcccacctcttcaagtgctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatgaactgcgaactgcgatgaagtacagtaggatctgcccacctcttcaagtgctgac 260

                                                                       
Query: 61  tcaaaaatgcaaaacgtttcccctttctcctctctgtctcttactttgtggggctggcca 120
           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaaaatgcataacgtttcccttttctcctctctgtctcttactttgtggggctggcca 320

                                                                       
Query: 121 gaacctaagcgcactttccctgctcctcttggcttccttgcttttctctgaagcccttgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gaacctaagcgcactttccctgctcctcttggcttccttgcttttctctgaagcccttac 380

                           
Query: 181 aacactctttg-ttgt 195
           |||| |||||| ||||
Sbjct: 381 aacattctttgcttgt 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 596
Length adjustment: 8
Effective length of query: 187
Effective length of database: 588
Effective search space:   109956
Effective search space used:   109956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)