BAC Information

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BAC

Clone NameMSMg01-279G22
Chromosome6 (Build37)
Map Location 13,888,044 - 13,888,280
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik
Downstream geneLOC100041043, LOC100040513, LOC667797, Ppp1r3a, Foxp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279G22.T7 (MSMg01no279_g22.b1)MSMg01-279G22.TJ (MSMg01no279_g22.g1)
ACCAG416799
length732776
length of high quality
(start - end)
---237 (77 - 313)
definitionCHROMAT_FILE: MSMg01no279_g22.b1 PHD_FILE: MSMg01no279_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:01 2005CHROMAT_FILE: MSMg01no279_g22.g1 PHD_FILE: MSMg01no279_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCTCCCTTTA
ACCCCCCAGTTCATACAGTATCGCTAAATCCTTTGTCTCCTTAATCATCT
TGTCATAATTGGATTTTATTATCCTCATTTAT
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCACCATTCCAACCCTGTGCT
CCTTCCTCTGTGTTATTCACACATTTCACCTGGAGGGAGGATTTCTGTCA
GCCTGGTGTCATAGTCTGTGCATTTTAATCTGAACACATGGAATGTAGAA
AACGGAGTTCAAAAGTCATCACATAGCAAGTTCAAGGTGAGCATGGGCTA
CAAGAGGCTCTTTCTCAACAAAACAAACACAAAAGTCAACATGGAGGCTT
GTCCCATGTAGACTGCATATTCTGTAGCTAGACAGAGGGGCATTTCAGAC
AAGTATATTTAGTTCGGCTCCCAAGACGAATCCCCAGGATTCTTGTTTAT
AGATTAATTTTTGTTTGCCCCCCAAAAATAAAACAATATTGATGTGGTGT
TGGTCTACTCCCCCCTTCCTCATCTTTGTCATCTTATTTGCTTGCCCTTC
CTGTTTATCAGTTGCTTTCCTGTTTCATTTCCATTTTCTTTTCTTATTCA
TCCGCATTTTTATTCTTTTTTTCCTATTCATTATCCTATTTCTATTTTAC
CCTTTTCCTTTTTCTTTTCCTTTTCTCTTATTCTTATTTTCTTTCTTCTT
ATCTTTTACCTCTTATAACCCCTCCTCTTTTTTTCCTTTTTCCCCTTTAT
ATTTTTTCTTGTGCTCTTTATACCACTGCTCTGTTTTTTATGTTTTCTCT
CTTTTCTCATTTATTTTCCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_g22.g1 MSMg01no279_g22.g1 CHROMAT_FILE:
MSMg01no279_g22.g1 PHD_FILE: MSMg01no279_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:01 2005
         (237 letters)



>mm_chr6_13887844_13888480
          Length = 637

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctcaccattccaaccctgtgctccttcctctgtgttattcacacatttcacctggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctctcaccattccaaccctgtgctccttcctctgtgttattcacatatttcacctggagg 260

                                                                       
Query: 61  gaggatttctgtcagcctggtgtcatagtctgtgcattttaatctgaacacatggaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggatttctgtcagcctggtgtcatagtctgtgcattttaatctgaacacatggaatgt 320

                                                                       
Query: 121 agaaaacggagttcaaaagtcatcacatagcaagttcaaggtgagcatgggctacaagag 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaaaggagttcaaaagtcatcacatagcaagttcaaggtgagcatgggctacaagag 380

                                                                    
Query: 181 gctctttctcaacaaaacaaacacaaaagtcaacatggaggcttgtcccatgtagac 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctctttctcaacaaaacaaacacaaaagtcaacatggaggcttgtcccatgtagac 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)