Query= MSMg01no279_j15.b1 MSMg01no279_j15.b1 CHROMAT_FILE:
MSMg01no279_j15.b1 PHD_FILE: MSMg01no279_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:14 2005
(198 letters)
>mm_chr6_33933445_33934042
Length = 598
Score = 362 bits (187), Expect = e-104
Identities = 190/191 (99%)
Strand = Plus / Plus
Query: 5 gaattcatttattttaacttcattcctaaacaaagaaaaggaacagcccggaaaaccttg 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcatttattttaacttcattcctaaacaaagaaaaggaacagcctggaaaaccttg 264
Query: 65 taccttaaaacacacttcatactcacctataatcttacattccttgatactgttctaatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taccttaaaacacacttcatactcacctataatcttacattccttgatactgttctaatg 324
Query: 125 ttgatcctggagaagccatccatgtctactccagtagagagtgctggaagtccctctgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgatcctggagaagccatccatgtctactccagtagagagtgctggaagtccctctgga 384
Query: 185 gtctggccttc 195
|||||||||||
Sbjct: 385 gtctggccttc 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space: 112100
Effective search space used: 112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no279_j15.g1 MSMg01no279_j15.g1 CHROMAT_FILE:
MSMg01no279_j15.g1 PHD_FILE: MSMg01no279_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:14 2005
(547 letters)
>mm_chr6_34047118_34048063
Length = 946
Score = 940 bits (486), Expect = 0.0
Identities = 532/548 (97%), Gaps = 3/548 (0%)
Strand = Plus / Minus
Query: 1 acagatgccactggcttaactcctggggccaccagagataccctaaaggcttattaataa 60
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 746 acagatgccactggcttaactcctggggccaccagagataccctaaaagcgtattaataa 687
Query: 61 ggactatattcattagaatttcaaatatactcacttgaatgttgtctgatctctacaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggactatattcattagaatttcaaatatactcacttgaatgttgtctgatctctacaatg 627
Query: 121 ccactaaagtggaagtttatctttaattatcaactg-aaaaaaaaacctccctgtgcaaa 179
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 626 ccactgaagtggaagtttatctttaattatcaactgaaaaaaaaaacctccctgtgcaaa 567
Query: 180 ttaactgtaaacacgagataaggttttgccttaagaaaacacagtctttttcagaatatt 239
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 566 ttaactgtaaacacaagataaggttttgccttaagaaa--acagtctttttcagaatatt 509
Query: 240 aaaccttttagaaaaataaggttctgttgatgatatagatctgatgactgactgtattcc 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 508 aaaccttttagaaaaataaggttctgttgatgatatagatctgatgactgactgtaatcc 449
Query: 300 atcctgtccactttcaagctagaatttcattagtcaataacaagatgccacagtttcgat 359
|||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 448 atcctgtctactttcaagctagaattccattagtcaataacaagatgccacggtttcgat 389
Query: 360 tagtagatgtttctgagaagttataacacttttataaattctataacttatacctttcat 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 388 tagtagatgtttctgagaagttatgacacttttataaattctataacttatacctttcat 329
Query: 420 taaatcagataggtgtaacctaattatttcaaataagtaagattttactatacactctaa 479
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 328 taaatcagataggcgtaacctacttattccaaataagtaagattttactatacactctaa 269
Query: 480 agtggcagtctactttcctgtgcacacattattttgcctgttaatttgctaggtagtccc 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 268 agtggcagtctactttcctgtgcacacattattttgcctgttaatttgctaggtagtcac 209
Query: 540 tgcacgct 547
||||||||
Sbjct: 208 tgcacgct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 946
Length adjustment: 10
Effective length of query: 537
Effective length of database: 936
Effective search space: 502632
Effective search space used: 502632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
