BAC Information

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BAC

Clone NameMSMg01-279K23
Chromosome6 (Build37)
Map Location 77,809,836 - 77,810,183
singlet/doubletsinglet
Overlap geneCtnna2
Upstream geneLrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279K23.T7 (MSMg01no279_k23.b1)MSMg01-279K23.TJ (MSMg01no279_k23.g1)
ACCAG416979AG416980
length744743
length of high quality
(start - end)		693 (44 - 736)348 (384 - 731)
definitionCHROMAT_FILE: MSMg01no279_k23.b1 PHD_FILE: MSMg01no279_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:20 2005CHROMAT_FILE: MSMg01no279_k23.g1 PHD_FILE: MSMg01no279_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCTGCTCTGAGCCCCCTTTTTAATGGGGTTATTTGATTTTAT
GGAGTCCACCTTCTTGAGTTCCTTATATATATTGGATATTAATCCCCTAT
CTGATTTAGGATAGGTAACGATCCTTTCCCAATCTGTTGGTGGCCCTTTT
GTCTTATTGACGGAGTCTTTTGCCTTACAGAAGATTTGCAGTTTCATGAG
GTCCCAATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGAACTA
TTCAGGAATTTTTCCCCTGTAACCATATCTTCAAGGCTTTTCCCTAATTT
CTCCTCTATAAGTTTCAATGTCTCTGGTTTTATGTGGAGTTCCTTAATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGAATCAATTCGCATT
TTTCTACATGATAACCACCAGTGGTGCGAGCACCATTTGTTGAAAATGCT
GTCTTTTTTCCACTGGATGGCTTTAGCTCCCTTTTCAAAGATCAAGTGTC
CATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTAGCTATACCAGTACCATGCAGGTTTTATCACAATTACTCT
GTAGTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTGTTAT
CCTTGAGAAGAGTTTTTGCTATCCTAGTTTTTTTGTTATTCCAG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATAAAGAAGCCATCACTCCATTTT
CTGACAAGGGTCTATTGGGTCATGCTTTATTTACATAGTCTTTGGCTCCA
GTTTGGTTTCCACTATGTGATAGCACATTATCTCTGACTTTTCCCAAAGT
TACTACCTGGGTCAGCTTCTGCTCCTTCACACTGAGAATCACAGAATTGG
TCATTTAGTAAGAAATATTATGGCTACCAAAGATATGGCTCCACAAAATA
AAGTACTGGAGTCTCAATATGTAAATATACTATGTTTGTGTGTTGTCTGC
ATGAGTGTGCATACTCGTATTCATACGCACGCCTGTGCACATATGCTAGT
AAATTAAAGTTGGAGGTCAAGATTCTTATGAATACAAGAGATCTTTGACT
AAATAATATCTTTTAGATGCCACTTGTCTGATAAACAACAGATAAATCGA
TGAATAAATAAGATTTTCAATTTCAAATGACTTACTATGATAAGCAGATA
AGCCAATCTTATGTCCTATAACACATCACATAAATAAAAAGCTTTCTTAT
GCTTCTTTCCTTACTTTATCTACCAATTATTCATTTGGTAAATATTAATT
AACTACCCAAGGCATGCAAGTCCTACAAGAATGTACTAGAAACATCAGGA
TGAATTATACTCACCTAGTTTTGAATGAGACTTGTTATCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_k23.g1 MSMg01no279_k23.g1 CHROMAT_FILE:
MSMg01no279_k23.g1 PHD_FILE: MSMg01no279_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:20 2005
         (348 letters)



>mm_chr6_77809636_77810383
          Length = 748

 Score =  665 bits (344), Expect = 0.0
 Identities = 347/348 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgcacatatgctagtaaattaaagttggaggtcaagattcttatgaatacaagagatc 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgcacgtatgctagtaaattaaagttggaggtcaagattcttatgaatacaagagatc 260

                                                                       
Query: 61  tttgactaaataatatcttttagatgccacttgtctgataaacaacagataaatcgatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgactaaataatatcttttagatgccacttgtctgataaacaacagataaatcgatga 320

                                                                       
Query: 121 ataaataagattttcaatttcaaatgacttactatgataagcagataagccaatcttatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaataagattttcaatttcaaatgacttactatgataagcagataagccaatcttatg 380

                                                                       
Query: 181 tcctataacacatcacataaataaaaagctttcttatgcttctttccttactttatctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctataacacatcacataaataaaaagctttcttatgcttctttccttactttatctac 440

                                                                       
Query: 241 caattattcatttggtaaatattaattaactacccaaggcatgcaagtcctacaagaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caattattcatttggtaaatattaattaactacccaaggcatgcaagtcctacaagaatg 500

                                                           
Query: 301 tactagaaacatcaggatgaattatactcacctagttttgaatgagac 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactagaaacatcaggatgaattatactcacctagttttgaatgagac 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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