BAC Information

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BAC

Clone NameMSMg01-279O16
Chromosome6 (Build37)
Map Location 39,688,332 - 39,688,641
singlet/doubletsinglet
Overlap genenone
Upstream geneHipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2
Downstream geneMrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279O16.T7 (MSMg01no279_o16.b1)MSMg01-279O16.TJ (MSMg01no279_o16.g1)
ACCAG417147AG417148
length752753
length of high quality
(start - end)		316 (45 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no279_o16.b1 PHD_FILE: MSMg01no279_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:38 2005CHROMAT_FILE: MSMg01no279_o16.g1 PHD_FILE: MSMg01no279_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGATGTTATCAAACCACAGGAATAAATGAAGGCATAGTAGCCCC
AAACCAGAAATCCTAACAGCTTGACTTCTTCCAGTTTGATAGTCGGAACC
TCAGCAGCTCATAAAAAGCAGCCTGTAATTATGCCTGGGAGTTTCCAAAA
GCCATGATTCCCAAGACCAGGCATCCACGTTGCCCAATCCCAGGGGGCCA
GACTGACACTGTGTTGGGGACGAATATCAGTTCCAGAGCACAAGTGAGAG
TCACACTGTGTAAAATGTTGGTGACCATAGAATGGTGCTAATGGTGGCGC
TAGGTCTTGTTTATATTCAAACAAACGCTCCCTCTTAGGATCTGCCATGT
TCTTCCTCTTCTATTACTGCCTATCAGTACCTGGGGAAGCACGGATGCTA
GTGCTGAGGGCATGTTTCACAGACTTCCCTGTGTTTGACTTACTCTTCCA
CATCACCATTTATCACTGAAGGCAGGAACCTGGAGGCAGGAGCTGATGCA
GAGGCCATGGAGGAGTTGTTGGTTACTGGCTTGCTGCTCATGGCTTACTC
AGTCTGCTTTCTTATAGAACCCAGGACCAGCAGCCCTGAGTGGCCCCACC
CACAGAGGGTTAGGCCCTCCCTCATCAGTCATTAATTTAAAAAATGACCA
CTAGGCTTGCCTACAGCCTGGTCTTATGGAGGCTGTTTCTCAATTGAGGC
TN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCCATGAGGAGAGCTGAGGGGAC
AACTATGGGAAAACACCTGGAGCAGAAAAAGTCACATCAATACTAAAATA
CAAGTGTCTTGGGGATTTTGGCTGGAAGATAGCCAGATTAGTTTAGAGGA
TTAAAATAGATTAATAAATGTTCAAATACTGTGCTATAAAGCTTGATTAA
ATAAATCTTATAGTCTGTTTAATTTTTGTGCGAGCTAGCCAGGAAAAAAG
AAATACCATTACTTTTAAAATTGCACTAACAAGCAACAAATCAAATATTG
TGATATTGAATATTATTGATGCGCCTACTTTTTGTTATTAACTTGACTAC
GTCTGGAATGAATCTGTGAGGGATCTTTTTTTTCCCCTTAACTAAACTAT
CTGAAGTGGGAAAACCCATTCTAATCTGGATCTTTGAGGTAGAAAGATAC
ACTTTTTAAATCTGGCCACACCTTCTGCTGGCAGCGTAGATAAAGGACAT
GGAGAAGGAAGCGTGCTCTCTTTGCCTGCTTGTTCTCACTCTCACTAGCA
AGTCCATTCTTTTACTGGCATTAGAGTCAGCCTACTTCTTCAGGATTCTG
GCAGATACTGAAGACCAGTAGGGACATCCAGCCTCATGGACTGAACAACT
ACTGGATTGTTGGACTTTCCATTAGTAGACTAGCTAGACCATAATCTGTN
AAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_o16.b1 MSMg01no279_o16.b1 CHROMAT_FILE:
MSMg01no279_o16.b1 PHD_FILE: MSMg01no279_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:38 2005
         (316 letters)



>mm_chr6_39688128_39688842
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagatgttatcaaaccacaggaataaatgaaggcatagtagccccaaaccaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattctcagatgttatcaaaccacaggaataaatgaaggcatagtagccccaaaccaga 455

                                                                       
Query: 65  aatcctaacagcttgacttcttccagtttgatagtcggaacctcagcagctcataaaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aatcctaacagcttgacttcttccagtttgatagtcggaacctcagcagctcataaaaag 395

                                                                       
Query: 125 cagcctgtaattatgcctgggagtttccaaaagccatgattcccaagaccaggcatccac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cagcctgtaattatgcctgggagtttccaaaagccatgattcccaagaccaggcatccac 335

                                                                       
Query: 185 gttgcccaatcccagggggccagactgacactgtgttggggacgaatatcagttccagag 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 334 gttgcccaatcccagggggccagactggcactgtgttggggacgaatatcagttccagag 275

                                                                       
Query: 245 cacaagtgagagtcacactgtgtaaaatgttggtgaccatagaatggtgctaatggtggc 304
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 274 cacaagtgagag-cacactgtgtaaaatgttggtgaccatggaatggtgctaatggtggc 216

                      
Query: 305 gctaggtcttg 315
           |||||||||||
Sbjct: 215 gctaggtcttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 715
Length adjustment: 9
Effective length of query: 307
Effective length of database: 706
Effective search space:   216742
Effective search space used:   216742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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