BAC Information

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BAC

Clone NameMSMg01-280A12
Chromosome6 (Build37)
Map Location 104,931,992 - 104,932,225
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn6
Downstream geneLOC384470, LOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280A12.T7 (MSMg01no280_a12.b1)MSMg01-280A12.TJ (MSMg01no280_a12.g1)
ACCAG417228AG417229
length717726
length of high quality
(start - end)
234 (120 - 353)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no280_a12.b1 PHD_FILE: MSMg01no280_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:47 2005CHROMAT_FILE: MSMg01no280_a12.g1 PHD_FILE: MSMg01no280_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTGCCGAGGAGGCGCGGAATTCACAGT
TCATTCCAACAAAAGTTAACGATGGAGGAGTAAGGACCTGAAAGATGAAG
AGTCTAGATTTATACCTTAGTGAGAGCTCTGAGGTCTTGGTCAAGATCAT
TGAACACGCCTGTGTTCTGTTCACCCATGGTTGATTCTCACATTCATGGG
ATTTGGGTATGCAGGAAATTTGCTTGTCTGGATTTGGGGTTTATATGTTT
ATTTATTCATGTTTTAAAAGTTCTTTCAAATAATGTAGCACTTGACTGAA
ACCTATCAAGATATTTTTTTTTCATAACTCAGTAGAAAATATATTCAAAA
ATTTTTATTTATTGCCCCCCACCGCTTTAGCTTAATAAACACTTTAGGAA
TTGACTTTGTTCAATTCCATCCTGAGAGTTCTTTAAACATTATATCCCCA
CAGGAAATTTTCTAGTTTGTCCCCTTAAGTGCTCTTAGCGATAAAATATT
TCTTCAGGTAGTAGAGATAGGTATCTGAATGTCAAAGACAGTAACTTATC
AACACCTATCATGAGTGGACAATTTTAATTTAGTATCATACTGCTCATGA
ATTCTCAAAGCGGTCAATGAAAACACTGCCAATTTCAAAGCTTCACATAC
TGACACTCATTGTATACGCAGTAGTGACGATGCCTGGTTAGTGATGACTA
ATGATGTTCATGCCATA
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTTAGTTCTACAACCCATTT
TTTTGACTGGGTTGTTTGGTTTTTTAGTAGTTACCTTTTGAGTTATTTAT
ATATTTTGGATATTAGCCCTGCATCAGAGGTGGGGTTAGTGAAGATTTTC
TCACAGTCTGTAGGTTATCAATTAGTCTTATTGACTATGTTCTTTGCCTT
ACAGAAGCTTTCCAGTTTCATGAGGTCCCATATATCAATTCTTGATCTTA
GAGCATAAGTCATTGGAATTCTGTTTTTGAAATTTTCCCCTGTGCCAATG
AGTTCAAGGCTCTTTCTTTCTTTCTCTTACAACAGATTCAGTTCATCTGG
TTTTATGTTGAGGTTCTTCATCCACTTGGACTTGAGCTTGTGCAAAGTGA
CAAATATGGGTGTATTTTCATTTTTCTACATAAAGACAGACAGACCAACA
CCATTCATTGAAGATGCTTCCTTTTTTCCATTGTATATTTTTGGCTTCTT
TGACAAAGATCAAGTGTCTTTGAGTGTGTAGTTTTGTTTCTGGGTCTTCA
ATTCTATTCCATTCTTCAACTTTTCTATCTCTGTACCAATACCACACAGC
TTTAATCACTATTGCTCTGTAGTAAAACTTGAAGTCATCGATGATGATTC
CCCAGCTGTTCTTTTATTAAGAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_a12.b1 MSMg01no280_a12.b1 CHROMAT_FILE:
MSMg01no280_a12.b1 PHD_FILE: MSMg01no280_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:47 2005
         (234 letters)



>mm_chr6_104931792_104932425
          Length = 634

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagagctctgaggtcttggtcaagatcattgaacacgcctgtgttctgttcacccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgagagctctgaggtcttggtcaagatcattgaacacgcctgtgttctgttcacccatg 260

                                                                       
Query: 61  gttgattctcacattcatgggatttgggtatgcaggaaatttgcttgtctggatttgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgattctcacattcatgggatttgggtatgcaggaaatttgcttgtctggatttgggg 320

                                                                       
Query: 121 tttatatgtttatttattcatgttttaaaagttctttcaaataatgtagcacttgactga 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatatgtttatttattcatgttctaaaagttctttcaaataatgtagcacttgactga 380

                                                                 
Query: 181 aacctatcaagatatttttttttcataactcagtagaaaatatattcaaaaatt 234
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||
Sbjct: 381 aacctatcaagatatgtaattttcataactcagtagaaaatatattcaaaaatt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)