BAC Information

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BAC

Clone NameMSMg01-280F12
Chromosome6 (Build37)
Map Location 88,910,402 - 88,910,669
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175
Downstream gene4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280F12.T7 (MSMg01no280_f12.b1)MSMg01-280F12.TJ (MSMg01no280_f12.g1)
ACCAG417461AG417462
length766747
length of high quality
(start - end)
315 (46 - 360)39 (61 - 99)
definitionCHROMAT_FILE: MSMg01no280_f12.b1 PHD_FILE: MSMg01no280_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:09 2005CHROMAT_FILE: MSMg01no280_f12.g1 PHD_FILE: MSMg01no280_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAACTTAGCAGAGAGGCTAATCAGCATTTGTCCCCCTGGGTCC
ATGGTGTGCCTTTCTGTGAGCTCACCCACCCTGGGGTCATAGTCTTTGGT
GGAACATAGAGGTGTAGCATAGGGCCTAGGAAGGGTGGAGGTTGGCCTTG
GACTTCTGCTCCCTCCTGCTGTGGTGGACACTGCGCTAGTTGCTTCTCAG
CCCTGTGACGCCAAGCTTTGCTCAGCCTGGGCATGGCTGAGACAAGACAC
CACCTGAGATTCTTTATCTGATTTATTCTGCTCATACACCAGACCCTGCT
CATCACCAGATTCGGTCGCTCCCAAGGCCATNCCGCGGAAGCCAGCCTCG
GAGCGGCATGCCGATGCTTCCATTTAAAAAAAAACTTGCAGCCTTTGGTC
CAGCTTTCTGCTCCACACAGAGGCTCGCTTCACCCTGAACGTGCCATGGT
CTGCCCTGTGACTTCCTGAATCGTCCCTTCCTCCTTCAGTGACTAACAGG
CTCCCTTTCCTGAGCTCTGCTATAGACATTTGTCATCTGATCCTGGGGCC
TGCTTGTTCCCTGATCAAATCATTTTTGTACCATGAACAAGAAATCCAGT
GAGGCTCCGCATGCTGAGAGCATAAGGCCTGGGCCCACTTATCCCCACCA
GAAAGGTGGTACCATCTCATTTGTACAGGGAGGACCACTCATCTGGTCCC
CTTGACACGTCACGGG
GGAGGACGCCTGGTTCCGCACCTGAGGNGAANNANAGAAGGTTCCCAGGA
GTACGAGAGNAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTT
ATACCCCGAGAGAGAGAGAGNGGGAAANNGAGGGNAGGGAAGGAGAANAA
GGAGGAAAGAANNNGAGGGANAGAGGGGGAAAGAGAAGGGAGAGAAAGAN
AGAAAGAGAAAAAAAGNGANAGGGAAAGAAAAGGGTTTATTTTAGTGAAG
AGNTTTNAGTNTGAAAGGGAAGGAAGTTGAGGAAAGAAATAGGAGGGNTG
GTTTTTTTTTTTTGAGGANGNGNGAAGAGGAGAGGGAGGNATTTTTTTTT
TTTTCCCCCCCCCCCCCAAAGAGAGAAGGNGAAGGGGGGGGAGGGCGGGA
GCGGAAAAACNNCAAGNCAGAAAGCGGGGGGGGGGGGCGCACACGAACNC
GGGGACACCCAACCAGACCAAGGGACGGACCTGCCCGGAGCCACACGTGA
CAGAAGGACCTGCCTGTCAAGATGCTACAGTTTCTTGGCCTTGTAATAAG
AGCTTACTGTCCGGACTGGAGGGAAAAAAGGCTAAGAGGACCATGGCCAT
GGAGTTTTTATTTAGTAGGGGGATCTATGGCTGGCACGAACAAAGCTTTT
TTTTATCGCTGCGGGGAATCCGGAAAGTTTTCACTCTGCAGAAAGGGGAG
GAAGGGCACACGCTTTAATGTAAATCCAAGATGGGAAGGGAAATCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_f12.b1 MSMg01no280_f12.b1 CHROMAT_FILE:
MSMg01no280_f12.b1 PHD_FILE: MSMg01no280_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:09 2005
         (315 letters)



>mm_chr6_88910177_88910891
          Length = 715

 Score =  449 bits (232), Expect = e-130
 Identities = 259/268 (96%)
 Strand = Plus / Plus

                                                                       
Query: 26  aggctaatcagcatttgtccccctgggtccatggtgtgcctttctgtgagctcacccacc 85
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 226 aggctaatcagcatttgtccccctgggtccatggtgtgcctttctgtgagcttagccacc 285

                                                                       
Query: 86  ctggggtcatagtctttggtggaacatagaggtgtagcatagggcctaggaagggtggag 145
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 286 ctggggtcatagtctttggtggaacatagagctgtagaatagggcctaggaagggtggag 345

                                                                       
Query: 146 gttggccttggacttctgctccctcctgctgtggtggacactgcgctagttgcttctcag 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gttggccttggacttctgctccctcctgctgtggtggacactgcgctagttgcttctcag 405

                                                                       
Query: 206 ccctgtgacgccaagctttgctcagcctgggcatggctgagacaagacaccacctgagat 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccctgtgacgccaagctttgctcagcctgggcatggctgagacaagacaccacctgagat 465

                                       
Query: 266 tctttatctgatttattctgctcataca 293
           || ||||||||   | ||||||||||||
Sbjct: 466 tccttatctgaagcactctgctcataca 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)