BAC Information

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BAC

Clone NameMSMg01-280G17
Chromosome6 (Build37)
Map Location 10,903,914 - 10,904,197
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264, LOC100040285, LOC667650
Downstream geneAA545190, Ndufa4, Phf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280G17.T7 (MSMg01no280_g17.b1)MSMg01-280G17.TJ (MSMg01no280_g17.g1)
ACCAG417518AG417519
length755757
length of high quality
(start - end)
284 (376 - 659)316 (384 - 699)
definitionCHROMAT_FILE: MSMg01no280_g17.b1 PHD_FILE: MSMg01no280_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:15 2005CHROMAT_FILE: MSMg01no280_g17.g1 PHD_FILE: MSMg01no280_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCCGAGNGGGGCGG
AATTCCTGACAATTGCCAATAAAGTTCATTGCAAGACCAAGCCCCTATTG
TTCGCAATATTCTTTTCTTACATTCTTATAATAAAATGTTCTCAGTTTTC
CTTTATGTCACCAGAGACTTTGTCCTCCTTTAGCTGACTTTCTTTCCTTT
AAGTACATAAGTTCCCAAGTTCAAACACTTACACAACTTAGTATCCACTT
TGAATTATAAATTTAAAATCTTTCAATCTTAACATTTAAAGCCTTTAGTT
TGTTTTCTTCTTCAACTACATGGCTCANCTCCCCGAGCACTCTGTCTCAT
TGCCCCAGTGTTTGCTGGGTAATACAAAGTCCCTCTAATCAATGGATCCA
AAATTGGAAAGCCAAACAGGTGTTGTGCATTGTTCTTTCTCTCTTTAAAG
CCTAGAACAATTCAGCCCACTCACAAAGAAGGCTGTGCTCTGTTTCATAC
CTTCTCCTCATTCCAATGTGTTGGGAATATTAATCACAAGTTCACTTGGC
TTCACTTCTTGAGTGTATATTATTATCATAAATCACACACAAAAATCCCT
GGACAGGTAATATGTCTAGAATGTTGATTCAGAGAACATCTTTACAAATA
AAATTCAGATGTATAGATGCTCTTACTTAATTTTAAAGACATATCAAAAC
CTGTGCTGAGGTACTTCTCATGCTNAGAACAGTGAATTCAAAGTGTCGTG
ATCAT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAATAGGCAAAGTTATGTCTAAAA
TACAGAGCAATGTCTAATTCAGAGGCCAAACAGCCTCTCCATCTTTCAGT
GATAGTCTCTATACCTTTTAAGTATTTAGAATTCATCAGTATGGCTAAGG
TTCTATGCAGGCAGTGGGCATGGGGGAGTAAAGGGAGTGAGAGAAAACCC
ACATCCTGCCAGAGTTCCAGTGTTCTGGGTGGGCAGACGTAGAGGACTTC
CACAAGGTTTCTATGTGGCCCCTGGTGGGTGTCTTTCTGTGGGAAGCTAC
AGACCTAGCCCACGGTTTTGGACAAGGGGACGTCCTAGATTTCTGGACCT
CACAGAGGCTAGAGATAACAGGTTCTCAGTCTCGGGAATTCCAGGCACTA
CTGGACATCGCAGAAGAGCTGAGAAGAAAGTGGGGGCCCTGGAGGTGGCT
CAGTCATGCCCAGGCCCGAAGGGAGGAGAGGGCAGTGAGAGAGGGGGTGC
TGGGTGGTTCCCACACAGGTGAGAATCCTTGGTCTGTTCTGTTGCTAGAG
TGCATGATGCTGCTCTTTAGGGTGAAACCTGTCTCATCTTTCAAGCAGGG
CAGGCCTTGATGGTCAGAGACAGTCTATGGTTTTAGAGCTTTATTGAAGA
CATGCAGGGAGAAAGAGAGAAGGTAGAAAGAGAGAGAGAGAAGGAGGGCT
AGAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_g17.b1 MSMg01no280_g17.b1 CHROMAT_FILE:
MSMg01no280_g17.b1 PHD_FILE: MSMg01no280_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:15 2005
         (284 letters)



>mm_chr6_10903714_10904397
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtccctctaatcaatggatccaaaattggaaagccaaacaggtgttgtgcattgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagtccctctaatcaatggatccaaaattggaaagccaaacaggtgttgtgcattgttc 260

                                                                       
Query: 61  tttctctctttaaagcctagaacaattcagcccactcacaaagaaggctgtgctctgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctctctttaaagcctagaacaattcagcccactcacaaagaaggctgtgctctgttt 320

                                                                       
Query: 121 cataccttctcctcattccaatgtgttgggaatattaatcacaagttcacttggcttcac 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataccttctcctcattccagtgtgttgggaatattaatcacaagttcacttggcttcac 380

                                                                       
Query: 181 ttcttgagtgtatattattatcataaatcacacacaaaaatccctggacaggtaatatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttgagtgtatattattatcataaatcacacacaaaaatccctggacaggtaatatgt 440

                                                       
Query: 241 ctagaatgttgattcagagaacatctttacaaataaaattcaga 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagaatgttgattcagagaacatctttacaaataaaattcaga 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)