BAC Information

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BAC

Clone NameMSMg01-280I03
Chromosome6 (Build37)
Map Location 110,063,612 - 110,063,847
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280I03.T7 (MSMg01no280_i03.b1)MSMg01-280I03.TJ (MSMg01no280_i03.g1)
ACCAG417582AG417583
length740744
length of high quality
(start - end)
445 (46 - 490)236 (132 - 367)
definitionCHROMAT_FILE: MSMg01no280_i03.b1 PHD_FILE: MSMg01no280_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:22 2005CHROMAT_FILE: MSMg01no280_i03.g1 PHD_FILE: MSMg01no280_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATAAAGTCTTCAATTCATCTACAAAGCATTAACTCAAAAATTCA
TCTTCATGTTGATCTGCAGGAAATTTACCCAATAGAATGGGACAATGTCT
AGGTATCATCTGTTTATGTAATAGTGCCAGGAAAGGCATATCAGGAGCAA
GAAGCAATCTTGGGATGAAGTCTCTGGGGTTGTGCCTCTCCAGAGTGCAT
CCATCTTAGTCATGCAAAATGGTGAGCCATCTCCAGAAAACTCACTTGCT
TGCCATAGACTTTCCTAGATGGCTTCTATCAGTGGACAGTCTTTCACTTT
GTTGCCTGCCATTGATTCCCCTGCCCCTAACTTGACTACCTGGTTGGGAC
TCATTGGTGCAGGATGCATTTAGTTCTGAGAATGGATGTCCCAGGGTGGG
GCGGTACTCATGGGGGGGGGGGCTTCCCCTTCTCTGAGGAGAGACTGATT
GGGTAATGAGGGGCATTATAAAGATGGTACTGGGAGGATAGGAGGTAGGT
GGCATGTGACAGGTATATAAAGCGAATAATTAATTTATTGTCCAACCATC
AAATTCCTTATTACATAAAACCTTATTTGTTGTCCTCTACAACTGTATGA
TAGACCTTGACCGGACTACCCCGTATTTTCTACTCTTCTTGACCGCTTGC
CATGCCCTTGTATATGAACTCCCCCCCCTTTATCCCCCTN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGATGACCATAGCTATGTTT
ACAAGGGGGCAAATGAAGATTTTTACCCTTCAGGAGGCTGTCCCTCAATT
TTAGCAGCAGGAGTTTTGTTTTCTCTATTGATCCCAGAATAGCAATAGGA
GTTGGACCATTCTGCCAAAGTAACATGTATTTGTTATGCATACCAATATG
ATTATAAATATGCTTTACTGAACACATATGGTGTTAGGTGCTATTATAAA
CACCATATGTTTATTATACTATTCAGTTTGCTCTCCTTTAAAGGAAGGTT
TATTAACACCTCATTTGACTTATAAGACCACCCACTCATAAAAAGGTCAT
GTAATTTATCTTAGTCCTGCTGCTAATTAATTATTTAAATCAAAAGACTA
ACGAGTTAAACATTAAAATAGGAGTTCCGGAGCCTGGTTCTTTTTTGGTT
TTGTTCACAATTTTGTTTCGTTATCGCTGTTGCTTAATTAAGGTTGGCCG
CCGTCTATGATGAACATCCTTTGATGACCGAAGTTTTAATGAACAAAGTT
GCACAAGATCTTTTCTTACTTCCTCCTGTTGCCTGAATCTCCTTCATTCT
TATGCCCATATTGTAAAAGCTTTATACACACATCATAACATTTCTACAGT
GCCTCTCTGATTATCTTTGACCTTATATACTCTCTGGGCTAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_i03.g1 MSMg01no280_i03.g1 CHROMAT_FILE:
MSMg01no280_i03.g1 PHD_FILE: MSMg01no280_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:22 2005
         (236 letters)



>mm_chr6_110063412_110064047
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaggctgtccctcaattttagcagcaggagttttgttttctctattgatcccagaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aggaggctgtccctcaattttagcagcaggagttttgttttctctattgatcccagaata 377

                                                                       
Query: 61  gcaataggagttggaccattctgccaaagtaacatgtatttgttatgcataccaatatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gcaataggagttggaccattctgccaaagtaacatgtatttgttatgcataccaatatga 317

                                                                       
Query: 121 ttataaatatgctttactgaacacatatggtgttaggtgctattataaacaccatatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttataaatatgctttactgaacacatatggtgttaggtgctattataaacaccatatgtt 257

                                                                   
Query: 181 tattatactattcagtttgctctcctttaaaggaaggtttattaacacctcatttg 236
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 256 tattatactattcagtttgctctcctttaaaggaagggttattaacacctcatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)