Query= MSMg01no280_l05.b1 MSMg01no280_l05.b1 CHROMAT_FILE:
MSMg01no280_l05.b1 PHD_FILE: MSMg01no280_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:36 2005
(636 letters)
>mm_chr6_77974419_77975454
Length = 1036
Score = 1058 bits (547), Expect = 0.0
Identities = 618/653 (94%), Gaps = 19/653 (2%)
Strand = Plus / Minus
Query: 1 tttttgccttcaaatatgagtgaatgggtgtctgagatgtcatgaatattctctgactat 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tttttgccttcaaatatgaatgaatgggtgtctgagatgtcatgaatattctctgactat 808
Query: 61 tggattgtgagtatgcagttccctccatgttcaacagaggtactggattggaaaggaatg 120
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 807 tggcttgtgagtatgcagttccctccatgttcaacagaggtactggattggaaatgaatg 748
Query: 121 gagatatgtagaaaagagaagatatcaaaaacactgttccaattgtaacatatgtgctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 747 gagatatgtagaaaagagaagatatcaaaaacactgttccaattgtaacttatgtgctaa 688
Query: 181 accctcccagcatgg-----------------ctttcactttgcttagcagagatgtcca 223
||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 687 accctcccagcatggctttctggccagcctttctttcactttgcttagcagagctgtcca 628
Query: 224 atttatctgtgcctcttatagttactttaagtgatgtgaagacacaactttcaagacaac 283
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atttatctgtgcctcctatagttactttaagtgatgtgaagacacaactttcaagacaac 568
Query: 284 tagaaatccgacattgctgtgtaaactgtgtcaacttttttgtcgataaaacattcaaat 343
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tagaaatccaacattgctgtgtaaactgtgtcaacttttttgtcgataaaacattcaaat 508
Query: 344 tgagttaacattaatttctgtattttattctacattggaccagttcaactgagatagtct 403
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 507 tgagttaacattaatttctgtattttattctacattggactagttcaactgagataatct 448
Query: 404 atcttcctctgctgagtttgtcctctctcacagcaccttgaccacattgtcaaaaacatt 463
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 447 atcttcctctgctgagtttgtcctctttcacagcactttgaccacattgtcaaaaacatt 388
Query: 464 ttgaacaaaagcaattttgaaaaaaaaaaagaggcttattttcactcccaattccaaaat 523
||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 387 ttgaacaaaagcaattttg--aaaaaaaaagaggtttattttcactctcaattccaaaat 330
Query: 524 atgctctatcattgccaagaagtcaaggcaagaacttgaagcagttattcatgtatcaat 583
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 329 atgctctatcattgccaagaagtcaaggcaagaacttgaagtagttattcatgtatcaat 270
Query: 584 tgtaaagagcagagcagattaagagagcatgagagaacgaatgacaggaagag 636
||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 269 tgtaaagagcagagcagattaagagagcatgagagaaagaattacaggaagag 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_l05.g1 MSMg01no280_l05.g1 CHROMAT_FILE:
MSMg01no280_l05.g1 PHD_FILE: MSMg01no280_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:36 2005
(312 letters)
>mm_chr6_77822045_77822757
Length = 713
Score = 543 bits (281), Expect = e-159
Identities = 305/313 (97%), Gaps = 1/313 (0%)
Strand = Plus / Plus
Query: 1 tcagcctactgagtgccaggatggtagggtgcacatacatggatggactcgattcagttt 60
|||||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||
Sbjct: 201 tcagcctactgagtgccaggatggtagggtgcacctacatggttggcctcaattcagttt 260
Query: 61 gttgtttaaaagtgataaactgatatcagcttgtattttaatgaaaaaaa-tatttgaaa 119
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gttgtttaaaagtgataaactgatatcagcttgtattttaatgaaaaaaaatatttgaaa 320
Query: 120 atgggaagcagttatttaatattaaatgcttatagtctaagaatgtaaataattttccca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggaagcagttatttaatattaaatgcttatagtctaagaatgtaaataattttccca 380
Query: 180 gtgactgtattagatctcagaagtacatgctgaaggcatgtactctcctaagcctataag 239
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gtgactgtattagatctcaaaagtacatgctgaaggcatgtactatcctaagcctataag 440
Query: 240 ccattttgtgtcaacttcatgcaaattcctagaatattttatttcaaaatataagctcat 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ccattttgtgtcaacttcatgcaaattcctaaaatattttatttcaaaatataagctcat 500
Query: 300 cagcaagtcctta 312
|||||||||||||
Sbjct: 501 cagcaagtcctta 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space: 213312
Effective search space used: 213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
