BAC Information

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BAC

Clone NameMSMg01-280M07
Chromosome6 (Build37)
Map Location 40,661,188 - 40,793,487
singlet/doubletdoublet
Overlap geneMgam, EG638904
Upstream geneBraf, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138
Downstream geneMoxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280M07.T7 (MSMg01no280_m07.b1)MSMg01-280M07.TJ (MSMg01no280_m07.g1)
ACCAG417777AG417778
length732737
length of high quality
(start - end)		512 (69 - 580)662 (76 - 737)
definitionCHROMAT_FILE: MSMg01no280_m07.b1 PHD_FILE: MSMg01no280_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:41 2005CHROMAT_FILE: MSMg01no280_m07.g1 PHD_FILE: MSMg01no280_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(40,792,980 - 40,793,487)(40,661,188 - 40,661,848)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAGAAGACCGCGGAAT
TCCACCCCTTGACAGAGAAAACGGAGGAGCCCTCACAGACATCTCCCAGA
GACATCCCATCAATCTCCACCTTGATGCCTTGCCCATTTCCAGGTCTGCC
CTGTCTTGCAGGATGCACTTTCAGGCTTTGGAGTGGTTGTGCCATCTGGG
AAGCAAAGTCAAGACTGACCAATTGGAAATAAGAGATGCCAGGATGTTCC
TCCCTGTCACCCAAATATTAGCATCTTAAGCAGCTGATACACCTCCTTAG
TGAACTCCTCTACCAGACATGTCCTTGGGCAGGACCACAATAATCTCTGC
TCTTCCTGGTCCTAGAAACTAAACAACCTTCCTTTCAGTTATCCACTCCT
AGCTGCCTATTCTGCGAATTTATAAAGTACCTCCCTGAGTTCTAACTGCT
TATGTGTTCAGAGACTTAAAGGTGCACTTACAATCCGCAGCCCATCAAAC
TTCAAACTTTTCTGTGGCTCCTGAGGATTTGAATAGAGCTCTTTAATCTC
CTTCTTCCACCATGTGGCTGTGCTGTTACGCAGGAAGTCAGGATAAGCGA
CATGGGCCCTGTATAGCTGGAAGAGTAAGACATGCTTTCACGGGAAAGAT
CTCCCCCTATCTTGGAGAGAGAGTACTGATGACTAAATAGGAAATGGGCA
GACATCTAGGCCTATCCAGTCTCTGAACTAAC

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTATGGTGTCCACCCTTACTACATG
GGTCTGGAGGAGGATGGTTATGCCCATGGAGTCCTCCTGATGAACAGCAA
TGCCATGGGTAGGATGACACCTATGTCCTTTTATTGTGTAACAATCATTT
CTCAGTTTCTTAAGAATGTATCTGACTTAGCTGTCTAAAGACCAAATTAG
TCTTTCTGGTATCAGTTTTTCTTCTTATAGACCTTCTATATATTTTTAAA
TATGTTTAATTTGTATGTAATTCGCTGAACTTTTAATTTGCAATGCTGTT
GTAGTACATATTTAATATTAATCACAGGTTTCTACCACAGATTAGATCCT
TCAGGTCCCAGATAAAAGACCAAAAACTTTTATATTTATAACTCCCTATA
TTTATTATATTTATATTAATATGTTTATATATCCTATATTTAAATATAAG
CTTATATTTATGATTCTTAAATAAACACTAAAACTGCTCAAATACCAACC
CTTTATGGTTATTTTGTCTACTTTCCTGCCAATAACTTTGAGATATGACT
TCCCAGATATAACCCTGGGGCACTTTTACACTGACTGGCCAGCCTTCATG
ACCAGTTCTCATGATCTCTATCCTTTTGTGGTCTCTGCCTCAGAGCCCAA
GCCTGGGAACTGAAATAATGCCTACCACTCTTCTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_m07.b1 MSMg01no280_m07.b1 CHROMAT_FILE:
MSMg01no280_m07.b1 PHD_FILE: MSMg01no280_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:41 2005
         (512 letters)



>mm_chr6_40792776_40793687
          Length = 912

 Score =  913 bits (472), Expect = 0.0
 Identities = 499/508 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaggagccctcacagacatctcccagagacatcccatcaatctccaccttgatgccttg 64
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 712 ggaggagccctcacagacatctcccagagacatcccatcaatctccaaattgatgccttg 653

                                                                       
Query: 65  cccatttccaggtctgccctgtcttgcaggatgcactttcaggctttggagtggttgtgc 124
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct: 652 cccatttccaggtctgccctgtcttgcagggtgcactttcaggctttggagtagatgtgc 593

                                                                       
Query: 125 catctgggaagcaaagtcaagactgaccaattggaaataagagatgccaggatgttcctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 catctgggaagcaaagtcaagactgaccaattggaaataagagatgccaggatgttcctc 533

                                                                       
Query: 185 cctgtcacccaaatattagcatcttaagcagctgatacacctccttagtgaactcctcta 244
           ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 532 cctgtcacccaaatattagcatcttgagcagctgatacacctcctcagtgaactcctcta 473

                                                                       
Query: 245 ccagacatgtccttgggcaggaccacaataatctctgctcttcctggtcctagaaactaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ccagacatgtccttgggcaggaccacaataatctctgctcttcctggtcctagaaactaa 413

                                                                       
Query: 305 acaaccttcctttcagttatccactcctagctgcctattctgcgaatttataaagtacct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 acaaccttcctttcagttatccactcctagctgcctattctgcgaatttataaagtacct 353

                                                                       
Query: 365 ccctgagttctaactgcttatgtgttcagagacttaaaggtgcacttacaatccgcagcc 424
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 352 ccctgagttctaactgcttatgtgttcagagaattaaaggtgcacttacaatccgcagcc 293

                                                                       
Query: 425 catcaaacttcaaacttttctgtggctcctgaggatttgaatagagctctttaatctcct 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 292 catcaaacttcaaacttttctgtggctcctgaggatttgaatagagctcttttatctcct 233

                                       
Query: 485 tcttccaccatgtggctgtgctgttacg 512
           ||||||||||||||||||||||||||||
Sbjct: 232 tcttccaccatgtggctgtgctgttacg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no280_m07.g1 MSMg01no280_m07.g1 CHROMAT_FILE:
MSMg01no280_m07.g1 PHD_FILE: MSMg01no280_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:41 2005
         (662 letters)



>mm_chr6_40660988_40662049
          Length = 1062

 Score = 1232 bits (637), Expect = 0.0
 Identities = 655/661 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatggtgtccacccttactacatgggtctggaggaggatggttatgcccatggagtcct 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 201 ctatggtgtccacccttactacatgggtctggaggaggatggcaatgcccatggagtcct 260

                                                                       
Query: 61  cctgatgaacagcaatgccatgggtaggatgacacctatgtccttttattgtgtaacaat 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 cctgatgaacagcaatgccatgggtaggatgacacctgtgtccttttattgtgtaacaat 320

                                                                       
Query: 121 catttctcagtttcttaagaatgtatctgacttagctgtctaaagaccaaattagtcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttctcagtttcttaagaatgtatctgacttagctgtctaaagaccaaattagtcttt 380

                                                                       
Query: 181 ctggtatcagtttttcttcttatagaccttctatatatttttaaatatgtttaatttgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtatcagtttttcttcttatagaccttctatatatttttaaatatgtttaatttgta 440

                                                                       
Query: 241 tgtaattcgctgaacttttaatttgcaatgctgttgtagtacatatttaatattaatcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 tgtaattcgctgaacttttaatttgcaatgctgttgtagtacatatttaatattaatcag 500

                                                                       
Query: 301 aggtttctaccacagattagatccttcaggtcccagataaaagaccaaaaacttttatat 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 aggtttctaccacagattagatccttcaggtcccagataaaagacaaaaaacttttatat 560

                                                                       
Query: 361 ttataactccctatatttattatatttatattaatatgtttatatatcctatatttaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttataactccctatatttattatatttatattaatatgtttatatatcctatatttaaat 620

                                                                       
Query: 421 ataagcttatatttatgattcttaaataaacactaaaactgctcaaataccaacccttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataagcttatatttatgattcttaaataaacactaaaactgctcaaataccaacccttta 680

                                                                       
Query: 481 tggttattttgtctactttcctgccaataactttgagatatgacttcccagatataaccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggttattttgtctactttcctgccaataactttgagatatgacttcccagatataaccc 740

                                                                       
Query: 541 tggggcacttttacactgactggccagccttcatgaccagttctcatgatctctatcctt 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggggcacttttacactgaatggccagccttcatgaccagttctcatgatctctatcctt 800

                                                                       
Query: 601 ttgtggtctctgcctcagagcccaagcctgggaactgaaataatgcctaccactcttctg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgtggtctctgcctcagagcccaagcctgggaactgaaataatgcctaccactcttctg 860

            
Query: 661 t 661
           |
Sbjct: 861 t 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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