Query= MSMg01no288_c01.b1 MSMg01no288_c01.b1 CHROMAT_FILE:
MSMg01no288_c01.b1 PHD_FILE: MSMg01no288_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:08 2005
(676 letters)
>mm_chr6_93854729_93855804
Length = 1076
Score = 1255 bits (649), Expect = 0.0
Identities = 667/673 (99%)
Strand = Plus / Plus
Query: 4 ggaattcctcctgtttaccttcctccaagattcccactgccctcaagggaagctctaaaa 63
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttctgtttaaattcctccaagattcccactgccctcaagggaagctctaaaa 263
Query: 64 ctgatgtcccagtagggcacaggagtgtctctaagtccccctgtgacagtcccacacagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgatgtcccagtagggcacaggagtgtctctaagtccccctgtgacagtcccacacagt 323
Query: 124 gagtgactacagttccagcagcagcctttcctctggggtctcacttgaagtgtcctgtct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagtgactacagttccagcagcagcctttcctctggggtctcacttgaagtgtcctgtct 383
Query: 184 ctctgcccttcaaaggcaccagcagaacttcctgtgccacaaaaccatccttgacctgaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctctgcccttcaaaggcaccagcagaacttcctgtgccacaaaaccatccttgacctgaa 443
Query: 244 ttccagccaagtcaactatactcactgtcccccaaacacttttacatagtttacgggaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 ttccagccaagtcaactatactcactgtcccccaaacacttttacatagttcacgggaca 503
Query: 304 ccatgctatcatctctcatagatgcactgctcaccatcaatgctgctggatcctgacaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccatgctatcatctctcatagatgcactgctcaccatcaatgctgctggatcctgacaga 563
Query: 364 aaagggccacaagtcatgcaactttgtctcccagacccgagtctactatctttctcatag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaagggccacaagtcatgcaactttgtctcccagacccgagtctactatctttctcatag 623
Query: 424 ctgagagatagtaagtatttgtttcattaactggggaaaaaacttctcaaccaaccttgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 624 ctgagagatagtaagtatttgtttcattaactggggaaaaaacttctcaactaaccttgt 683
Query: 484 ataacttttttggctgtaccaactattttttttaatttaacactcactactaaaacttgt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ataacttttttggctgtaccaactattttttttaatttaacactcactactaaaacttgt 743
Query: 544 ccagatgtcggaaggcactgttctttctgagaatgataaaatggcataatttaaaatttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccagatgtcggaaggcactgttctttctgagaatgataaaatggcataatttaaaatttc 803
Query: 604 cccctttacaggagatgtactttaaaactactacttggctgtctccccattagtctttaa 663
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 804 cccctttacaggagatgtactttaaaactgctacttggctgtctccccattagtctttaa 863
Query: 664 ttagctgcttgaa 676
|||||||||||||
Sbjct: 864 ttagctgcttgaa 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_c01.g1 MSMg01no288_c01.g1 CHROMAT_FILE:
MSMg01no288_c01.g1 PHD_FILE: MSMg01no288_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:08 2005
(549 letters)
>mm_chr6_94041908_94042859
Length = 952
Score = 938 bits (485), Expect = 0.0
Identities = 535/555 (96%), Gaps = 9/555 (1%)
Strand = Plus / Minus
Query: 1 agcaggaaacctcaaacagcattttcacaccatgctagctagcatagcgtcctattttaa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 752 agcaggaaacctcaaacagcattttcacaccatgctagctagcaaagcgtactattttaa 693
Query: 61 tgtgtgtttcctaataacatacccatggagcccatggaccataatcatgggctcatttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tgtgtgtttcctaataacatacccatggagcccatggaccataatcatgggctcatttct 633
Query: 121 tctctggaattcccaatatccaagtgtttttctcgtattaaatacctgtatttcaggtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tctctggaattcccaatatccaagtgtttttctcgtattaaatacctgtatttcaggtta 573
Query: 181 tctccacccggggtattgctctcatttcccagtataaatcccccttcccttctctgtgtt 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 572 tctccacccggggtattgctctcatttcccagtataaatcccctttcccttctctgtgtt 513
Query: 241 tcttttttttt-----ggttggggggtatccaggggacacattatggctgtgcctcattg 295
||||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 512 tcttttttttttgggggg--ggggggtatccaggggacacattatggctgtgcctcagtg 455
Query: 296 ttccacgcatgcttcagcagttaagcttgtgtgctcttataagaggacaacgcactccag 355
||||| | ||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct: 454 ttccaggtatgcttcagcagttaagcttgtgtgctcttataagaggagaatgtactccag 395
Query: 356 aaagaaatcttattttgattaaaatgagacttaaaaaagatgcctttaaaaaaaaaacct 415
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 394 aaagaaatcttattttgattaaaatgagacttaaaaaatatgccttaaaaaaaaaaacct 335
Query: 416 tgtaaaagtcccaagtgaatctgacaggcatcttaagtggcagagaccacaatggtcccc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtaaaagtcccaagtgaatctgacaggcatcttaagtggcagagaccacaatggtcccc 275
Query: 476 agtctgtgaggtacacagacca-agggaacatggacttagaggactgtgctcttgtgaag 534
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 274 agtctgtgaggtacacagaccaca-ggaacatggacttagaggactgtgctcttgtgaag 216
Query: 535 atttcccattgatgt 549
|||||||||||||||
Sbjct: 215 atttcccattgatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 952
Length adjustment: 10
Effective length of query: 539
Effective length of database: 942
Effective search space: 507738
Effective search space used: 507738
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
