BAC Information

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BAC

Clone NameMSMg01-288D21
Chromosome6 (Build37)
Map Location 18,558,575 - 18,558,927
singlet/doubletsinglet
Overlap genenone
Upstream geneCapza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288D21.T7 (MSMg01no288_d21.b1)MSMg01-288D21.TJ (MSMg01no288_d21.g1)
ACCAG418121AG418122
length747744
length of high quality
(start - end)
294 (78 - 371)352 (393 - 744)
definitionCHROMAT_FILE: MSMg01no288_d21.b1 PHD_FILE: MSMg01no288_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:17 2005CHROMAT_FILE: MSMg01no288_d21.g1 PHD_FILE: MSMg01no288_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGTTCCCTGCACCATTTTTTAATGGGGTTATTTGG
TTTTATGGAGTCCATCTTCTTGATTTCTTTATATATATATATTGGATATT
AGTCTCCTATCTGATTTAGGATTCGTAAAGATCCTTTCCAAATCTGTTGG
GGGCTTTTTATCTTATTGATGATGTCTTTTGCCTTACAGAAGCTTTGCAA
TTTTATGAGGTCCCATTTGTCCATTCTTGATTTTACAACACAAGCCATTG
TGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTCCCC
CCCCCCTTTTTTACTCTCTATGTTTCAGTGCATCTGGCCTTATGTGGAGT
TCCTTGATCCACTTAGACTTGACCTCACTATAAGGAGATAAGAATGGATG
TATTCACATTCTTCTACATGATAACTACCAGTTGTGCCAACACCATTTGT
TGAAAATGTTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAG
ATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATT
CCATTGGTCTACTTGTCTGTCATTATACCAGTACCATGCAGTTTTTATCA
CAATTGTTCTGTAGTACAGCTATATGTCAGGCATGGTGATTCCACCAGAG
GTTCTTTTATTCTTGAGAAGAGTTTTTGCTATCCTAGGTTCTTTGTN
NATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCACTATCACTGTACCAGGG
AGAGTATGTGGTTTTAAATATAGATGTGCCCTTTCATGAAATTGGATGTA
CCTGTGTTTGGTGCATATATGTCTAGAATTGTGATATAGTTCCCATTATT
TTGTTGTTTTTATAGTTTTTCTTAGGCTTCTTTTGATTAACTGTTTGGAA
TTACTTATTCCCTGTGACAACATGGGCATGTTCATCTTTGTCTTCAGACT
GGAGTATTATAGTATATATAGTATATACAGTGTTCCTTGTATTTCTGGCT
TGGTGGCCATAAATTATTTTTTTTTTTTTTCCCCCCCCCAGTTTTTATTT
CTTTAAATTTTAATACATCTTTTCACGCCCTTTTGAAAAAAATATTTCTA
TTGAATTATCAGGTGCTATTCTTGTGGGCCTATCTTTATAAGGAACTCAA
TTTTTCTTCTTGTAGCGTCCCATATTCTTTTATGTTTTAACTACCTTTTT
TGGTCCTGTCTTTTTGGTATTCTGTAGGCCTCTTATACCTGGATAGATTG
TTTTTCTCTAGATTTGGGGAGTTTTCTTATGTGCTTTACTAAAAATATTC
TCTATGCTTTTGCTGTTATTCTTCTGTGTCCATAATCTGAATGTTGAATA
TTTTCATGTTATTCCAGAGGATGCTTACCTTCTGTTTATCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_d21.g1 MSMg01no288_d21.g1 CHROMAT_FILE:
MSMg01no288_d21.g1 PHD_FILE: MSMg01no288_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:17 2005
         (352 letters)



>mm_chr6_18558375_18559126
          Length = 752

 Score =  567 bits (293), Expect = e-166
 Identities = 339/359 (94%), Gaps = 13/359 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttatttctttaaattttaatacatcttttcacgcccttttg----aaaaaaatatttc 56
           |||||||||||||||||||||||||||||| || |||||||||    |||    ||||||
Sbjct: 201 ttttatttctttaaattttaatacatctttccaggcccttttgttttaaa----tatttc 256

                                                                       
Query: 57  tattgaattatcaggtgctattcttgtgggcctatctttataaggaactcaatttttctt 116
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 257 tattgaattatcaggtgctattcttgtgggcctatctttataaggaactcaacttttctt 316

                                                                       
Query: 117 cttgtagcgtcccatattcttttatgttttaactaccttttttggtcctgtctttttggt 176
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 317 cttgtagcttcccatattcttttatgttttaactaccttttt-ggtcctgtctttttggt 375

                                                                       
Query: 177 attctgtaggcctct-tatacctggatagattgtttttctctagatttggggagttttct 235
           ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 376 attctgtaggcctctct-tacatggatagattgtttttctctagatttggggagttttct 434

                                                                       
Query: 236 tatgtgctttactaaaaatattctctatgcttttgct--gttattcttctgtgtccataa 293
           || ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 435 tacgtgctttacgaaaaatattctctatgcttttgctatgttattcttctgtgtccataa 494

                                                                      
Query: 294 tctgaatgttgaatattttcatgttattccagaggatgcttaccttctgtttatcaata 352
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctgaatgttgaatattttcatgttattccagaggatgcttaccttctgtttatcaata 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)