BAC Information

Click to search

BAC

Clone NameMSMg01-288J11
Chromosome6 (Build37)
Map Location 79,168,698 - 79,169,038
singlet/doubletsinglet
Overlap genenone
Upstream genePap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288J11.T7 (MSMg01no288_j11.b1)MSMg01-288J11.TJ (MSMg01no288_j11.g1)
ACCAG418377AG418378
length767763
length of high quality
(start - end)
698 (70 - 767)341 (388 - 728)
definitionCHROMAT_FILE: MSMg01no288_j11.b1 PHD_FILE: MSMg01no288_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:42 2005CHROMAT_FILE: MSMg01no288_j11.g1 PHD_FILE: MSMg01no288_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTCAAGTGATGTACCTTGAATGCCCGAGAATTACCTAAAGAAATGTT
TAGCATCCTTAGTTATCAGGTTAATCCCAATCAAAATGACCCTGAGATTC
CACCTCACATCAATTGGAATGGCTAAGATCAGAAATTCAGGCAACAGCAC
ATGGTGATGAGAATGCAGAGAAAGAGGAACACTCCTCCATTCCTGGTAGA
GTTGCAAACTGGTACAATCACTCTGAAAATCAGTCTGGCAGTTCCTGAGA
AAATTGGAAATAGTTCTAACTGAAGACTCAGCTATACTACTTCTGGGCAT
ATACCCAAAAGATGCTCCTATATATAACAAGGATACATGCTCCTCTATGC
TCATATCAGCTTTATTTATAACACCCAGAAGCTAGAAACAACCCTGATGT
CCCTCAATGAGAGAATGCATGCAGAAAACGTGGCACATTTACACAATTGA
GTATTACTCAGCAGTTAAAAACAATGACTTTGTGAAATTTGCAGGCAAAT
GGATGGAACTAGAAAATATCATCCTGAGTGAGGTAACTGAGACACAAAAT
GGCACACATGGTTTGTACTCACTGATAAGTGGATATTAGCCAAAAAAGGT
CAGAATGCTCACTATATAACTCACAGACTATATTAAGCAGACACCAAACG
CAGACACTATTGCTGATGCCAAGAAGCTCTTGCTGACAGGAGCCTGATAT
AGTTGTCTCCTGAGAGG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGGAAAGATGTGATAATTCCTGGAATG
GCAAGAAGTCCTTCCTTCTAATCCATGACTTGAGTTTCTTGCATGGTTTC
CCTGTATTATGGACTGTAACCTGAGAACTATAAGATGAGATTAACTGATT
TCTCTAGAGGGTGCTTTGGGTTAGAGTGCTATCACAGTAACTGTGTGAAG
CTAGAACAATGACAAACTGAAGAAAATACATCTGGATATAGCAGAGGATC
TGGGCTCATGGATTCCACTTATCATAAGACCAGAATACCCAAGATAGCAC
AGTACACTCACTCTGTTTTTTCAACCCCGCCCCCTGTATAATTACCACTA
TATAATATATTACTGGATCCACATATAATTTTATTCAAACTCAGATACTG
CTGTCTCTATTCCCATGAGTTAGATCATTATAATTAAGCATAATGTGTCC
AGTCTTTCTATATATTAAAATGGATGTTATCTATACAAAAGGAAGACATT
TCTTATTTAACCTAAATAAATAAAGTAAAGCTGAGTCTGGCTGTTAGTTC
CTTGATTATATCACAGCATCTTACTTTCTCTATTCTATCCTGGCCTTTTC
TGGTCACATTGTAATACAATATCATTTATAAGTTATAGAGATAATCTCTT
TTACACTGTATAAAAGCATCACTTGTCAATAAAAATGTGAAGGTCAATAT
CTAAGACAGACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_j11.g1 MSMg01no288_j11.g1 CHROMAT_FILE:
MSMg01no288_j11.g1 PHD_FILE: MSMg01no288_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:42 2005
         (341 letters)



>mm_chr6_79168498_79169238
          Length = 741

 Score =  629 bits (325), Expect = 0.0
 Identities = 337/341 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataattaccactatataatatattactggatccacatataattttattcaaactcagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ataattaccactatataatatattactggatccacatataattttattcaaactcagata 482

                                                                       
Query: 61  ctgctgtctctattcccatgagttagatcattataattaagcataatgtgtccagtcttt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctgctatctctattcccatgagttagatcattataattaagcataatgtgtccagtcttt 422

                                                                       
Query: 121 ctatatattaaaatggatgttatctatacaaaaggaagacatttcttatttaacctaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctatatattaaaatggatgttatctatacaaaaggaagacatttcttatttaacctaaat 362

                                                                       
Query: 181 aaataaagtaaagctgagtctggctgttagttccttgattatatcacagcatcttacttt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agataaagtaaagctgagtctggctgttagttccttgattatatcacagcatcttacttt 302

                                                                       
Query: 241 ctctattctatcctggccttttctggtcacattgtaatacaatatcatttataagttata 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctctattctatcctggctttttctggtcacattgtaatacaatatcatttataagttata 242

                                                    
Query: 301 gagataatctcttttacactgtataaaagcatcacttgtca 341
           |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 gagataatctcttttacactgtgtaaaagcatcacttgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)