CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACGGATCCG
CGGAATTCTCATCATGACATTAAAGCTTTTGATGGCAAGAACATACTTTG
GGTTTAACATATAGTGTCTGTTGATCTGAACATAGTTGACCAAATATGCC
CTATAAGCCATGATTAGAATCTTTAGCTTAAAAAAATAAAAACATCCTAA
AGCTCTGGAGAATCTGATTTAAATATTAATGTTCTTTAAAAAGAAGGAAA
GGAAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGTAGTNTTTNTNT
NNNTTTNTNNNNNNNNNTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTTTTTTTTTTCCCCCCCCCCCCCCCCGGGTTGGTTGG
GGTTGTTTTTGTTTTTTTTTTTCCCCCCCCCTTAAAAAAAAAAAAGTTTT
CGGGGGGGGGGGGTTCTTTTTTTACCATCTATAACTTTTCTGCTATTTCC
CTTGTTTGTTACCACCCTATCTCATTCCTTTTTTTATTTTTCTTCTCTCT
TTTCATTTTACTCCCCTTCTTTTCCCCCCTTTTTACCACACAATTTTTCC
CAATCCTCTTTTTCTGTTATACCCCTTTCCCTCTTTTCCTCTTTTTATCC
TCCCACCCCTTTCCCTCCCTTTTTTTGCCTTACTCTCACCCTTCCTTTTT
TTTTTTTATTAACTACTCAACAATCGCCCCCCTCCCATCTTTAGATCTTT
TACGTACTCGTATTGTCCTCTCCTCGG

CATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCTTAAATGCATCAAAGT
GTGCCTAAAAGGAAATAAGAATAGTCCTTAATATGTTGATTAATGGCAAA
ATTTATTCTTTGTTAGTTGTATGTACTGAAAAGTTTTTCAGCTCTGGCCT
TTGTTTATTAACTGTAAATTTATTCAAATAATATTTCATTCACAAATAAG
CAGAAATTAAAATGTTTGAGGTTTAGCAGTGGTTCAGTGAACCTTACCTT
CTCTTGCTTATAAATTGTTAACATATATTAATATAGTTTGAGATACCTAT
TGACATAGATATATTATGTTATACTCGCCCCCCCCCGCAGAAAAATCAAG
TTTGGTGTGGAAAGACAGGAACCGCTGAAGACAATACAGTGCTCAGTCAG
TAGGTTCTTTTTGTCTTTCTTGCTAGTCTACTAAGGAAAATCTTAATGAG
CGTGTTTTAAATAACACAAAAGCAAATCTAACTGACACAATAAGCCCTTA
ATCTAATGTGATTTAATAATATGCTTTGAGAGCCCATTAAGTCTACAGCA
GTGGACTGATTACCAGGAAAGCCCCACACGTGAGTCCCCGTCCCTGTCCT
TTCACGAGGCTTACAATGCACCACTGACAGGGGCTAGAATGGAAGATGGA
TTCCGACAGAGCTGATGCCAAAGCAC

Query= MSMg01no288_m11.b1 MSMg01no288_m11.b1 CHROMAT_FILE:
MSMg01no288_m11.b1 PHD_FILE: MSMg01no288_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:56 2005
         (217 letters)



>mm_chr6_36751707_36752323
          Length = 617

 Score =  387 bits (200), Expect = e-112
 Identities = 209/212 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttgatggcaagaacatactttgggtttaacatatagtgtctgttgatctgaacatag 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 374 cttttgatggcaagaacatactttgggtttaacatatagtgtctgtagatgtgaacatag 315

                                                                       
Query: 61  ttgaccaaatatgccctataagccatgattagaatctttagcttaaaaaaataaaaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttgaccaaatatgccctataagccatgattagaatctttagcttaaaaaaataaaaacat 255

                                                                       
Query: 121 cctaaagctctggagaatctgatttaaatattaatgttctttaaaaagaaggaaaggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cctaaagctctggagaatctgatttaaatattaatgttctttaaaaagaaggaaaggaag 195

                                           
Query: 181 gaaggaaggaagggagggagggagggagggag 212
           || |||||||||||||||||||||||||||||
Sbjct: 194 gagggaaggaagggagggagggagggagggag 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no288_m11.g1 MSMg01no288_m11.g1 CHROMAT_FILE:
MSMg01no288_m11.g1 PHD_FILE: MSMg01no288_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:56 2005
         (286 letters)



>mm_chr6_36594247_36594932
          Length = 686

 Score =  503 bits (260), Expect = e-147
 Identities = 278/284 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcttaaatgcatcaaagtgtgcctaaaaggaaataagaatagtccttaatatgttga 60
           ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||
Sbjct: 201 acttcttaaatgcatcaaagtgtgcctaaaaggaaataagaagggtcattaatatgttga 260

                                                                       
Query: 61  ttaatggcaaaatttattctttgttagttgtatgtactgaaaagtttttcagctctggcc 120
           ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ttaatggcaaactttattctttgttagttgtatgtaccgaaaagtttttcagctctggcc 320

                                                                       
Query: 121 tttgtttattaactgtaaatttattcaaataatatttcattcacaaataagcagaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtttattaactgtaaatttattcaaataatatttcattcacaaataagcagaaatta 380

                                                                       
Query: 181 aaatgtttgaggtttagcagtggttcagtgaaccttaccttctcttgcttataaattgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgtttgaggtttagcagtggttcagtgaaccttaccttctcttgcttataaattgtt 440

                                                       
Query: 241 aacatatattaatatagtttgagatacctattgacatagatata 284
           |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacatagattaatatagtttgagatacctattgacatagatata 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)