Query= MSMg01no288_m21.b1 MSMg01no288_m21.b1 CHROMAT_FILE:
MSMg01no288_m21.b1 PHD_FILE: MSMg01no288_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:58 2005
(671 letters)
>mm_chr6_49420544_49421614
Length = 1071
Score = 1085 bits (561), Expect = 0.0
Identities = 611/645 (94%), Gaps = 29/645 (4%)
Strand = Plus / Minus
Query: 55 cctgaagaggcctaactccaaaggagagatgtggacctgggcctattaccaacccacaaa 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cctgaagaggcctaactccaaaggagagatgtggacctgggcctattaccaacccacaaa 711
Query: 115 gtggcctgggcccaaaggagaatatatgtgggccagggaccatccctgaacatgaagaag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gtggcctgggcccaaaggagaatatatgtgggccagggaccatccctgaacatgaagaag 651
Query: 175 catgggtccaaagcaagaagcgttgtgggtctgggccttttcctatctctgaagaggcct 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 catgggtccaaagcaagaagcgttgtgggtctgggccttttcctatctctgaagaggcct 591
Query: 235 gggcccacagaagatgacatgtggacctgaacttatccatatcccttgaagtgtcctgga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gggcccacagaagatgacatgtggacctgaacttatccatatcccttgaagtgtcctgga 531
Query: 295 cccaaaaagaaaatatgtgggcctaggctaattcataagaagagatgtgagcctgggact 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cccaaaaagaaaatatgtgggcctaggctaattcataagaagagatgtgagcctgggact 471
Query: 355 ctccctaacctgatgaggtgcccgcagctaaaaaagaagagatctgggcctgggcctatc 414
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct: 470 ctccctaacctgatgaggtgtctggagctaaaaaagaagagatctgggcctgggcctatc 411
Query: 415 cctaaacctcaagatgctcaagcacaaattgcaaagtcgtttgggcctgggcccatactg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cctaaacctcaagatgctcaagcacaaattgcaaagtcgtttgggcctgggcccatactg 351
Query: 475 ctgctgaagaggccatgtccaaaaacagaaaaaacatgggtctcagccattcccac-aat 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 350 ctgctgaagaggccatgtccaaaaacagaaaaaacatgggtctcagccattcccacaaat 291
Query: 534 gaaaggagcccaagccaaaccataaaaaaagaagaaatggggt----------------- 576
||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 290 gaaaggagcccaagccaaaccat-aaaaaagaagaaacggggtctgtcccagaagctgta 232
Query: 577 ----------ctgtcccagaagctgtgtcgcttctgtagtacgcactctcacctgcgcag 626
|||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 231 tcgcttctgcctgtcccagaagctgtgtcgcttctgtagtccgcactctcacctgcgcag 172
Query: 627 atagtaccccccagagctcgtgtctctagctgcatatgtagcaga 671
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 atagtaccccccagagctcgtgtctctagctgcatatgtagcaga 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_m21.g1 MSMg01no288_m21.g1 CHROMAT_FILE:
MSMg01no288_m21.g1 PHD_FILE: MSMg01no288_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:58 2005
(295 letters)
>mm_chr6_49252464_49253158
Length = 695
Score = 511 bits (264), Expect = e-149
Identities = 276/284 (97%), Gaps = 7/284 (2%)
Strand = Plus / Plus
Query: 19 tgggacttcaagctcacctgggcatctccatcttggtaaatactagattcctgaatgttg 78
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 212 tgggacttcaagctcacctgggcatctccatcttggtaaatactagatccctgaatgttg 271
Query: 79 ggcttctgcagaagagaacactctttacttttgcatattatttgagtttggggtatcatt 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggcttctgcagaagagaacactctttacttttgcatattatttgagtttggggtatcatt 331
Query: 139 cttcagtgaatcacagaccattacatttgggggcttgttca-------ctggcgttcccc 191
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 332 cttcagtgaatcacagaccattacatttgggggcttgttcagaattcactggcgttcccc 391
Query: 192 gactccaacacaaatagtgtttttctgatcatcagtttgggtgcctggttgtatcttgtc 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gactccaacacaaatagtgtttttctgatcatcagtttgggtgcctggttgtatcttgtc 451
Query: 252 ttgtctgtctttgtgtttctggtttctgtttcaggtttaatctg 295
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttgtctgtctttgtgtttctggtttctgtttcaggtttaatctg 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
