Query= MSMg01no288_p07.b1 MSMg01no288_p07.b1 CHROMAT_FILE:
MSMg01no288_p07.b1 PHD_FILE: MSMg01no288_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:10 2005
(639 letters)
>mm_chr6_15844783_15845821
Length = 1039
Score = 911 bits (471), Expect = 0.0
Identities = 568/639 (88%), Gaps = 61/639 (9%)
Strand = Plus / Minus
Query: 1 aatttaataaaatttattgacattttataaaaaaataaaaaaaaattacttactcccgat 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 982 aatttaataaaatttattgacattttataaaaaaat-aaaaaaaattacttacttgggat 924
Query: 61 aaaactacagggggcaggaatcaccaaagtgacaggaacagtcagggtgaggtagctcca 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 aaaactacagggggcaggagtcaccaaagtgacaggaacagtcagggtgaggtagctcca 864
Query: 121 ccttaataatactaggaattaccaaagacagagattcaaagacaaaatacactctcaaag 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 863 ccttaataatactaggaattaccaaagacagagattcaaagacaaaatactctctcaaag 804
Query: 181 ccagaagtaccacatgcttggctggatttggatattttagattcaggaggtatggcatca 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccagaagtaccacatgcctggctggatttggatattttagattcaggaggtatggcatca 744
Query: 241 taaattttcatttaaaacaatgaacagttttattaatttaattaaattaatttaattaat 300
|||||||||||| ||||||
Sbjct: 743 taaattttcatt--------------gtttta---------------------------- 726
Query: 301 ttaattaaaacttaaaacagtttccagggacatgataatttcttatggaggcctttgttc 360
||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 725 ------------------agtttccagggacatgataatttgttatggaggtctttgttc 684
Query: 361 ttacagctttaagaatctaatacattatctagtggaatcactgtgaaagcagaagaaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttacagctttaagaatctaatacattatctagtggaatcactgtgaaagcagaagaaagt 624
Query: 421 gatatgtgttccactcctagtgacagcatataatgaataaataagcaatcgtcattgttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gatatgtgttccactcctagtgacagcatataatgaataaataagcaatcgtcattgttg 564
Query: 481 tgattgttaccaaccaaattctaacttggtttcaatatggagtcactaaaggaatcccat 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgaatgttaccaaccaaattctaacttggtttcaatatggagtcactaaaggaatcccat 504
Query: 541 gaaagaggaggcaggaagagtgcaagagccagatgggatggaagacaccagggaaacaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 503 gaaagaggaggcaggaagagtgcaagagccagatgggatggaagacaccaggggaacaag 444
Query: 601 gccctctaagttaactgagcaaggctcacatgaactcag 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gccctctaagttaactgagcaaggctcacatgaactcag 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_p07.g1 MSMg01no288_p07.g1 CHROMAT_FILE:
MSMg01no288_p07.g1 PHD_FILE: MSMg01no288_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:10 2005
(273 letters)
>mm_chr6_15682364_15683036
Length = 673
Score = 518 bits (268), Expect = e-151
Identities = 271/272 (99%)
Strand = Plus / Plus
Query: 2 cttcctgagagctggcttaattttgtttttgtttttaaaggttatatttgcagaatttcc 61
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cttcctgagagctggtttaattttgtttttgtttttaaaggttatatttgcagaatttcc 261
Query: 62 acattgttctgagctgctgggaaaagatagtcacagatatattttttcatgtttcttagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acattgttctgagctgctgggaaaagatagtcacagatatattttttcatgtttcttagg 321
Query: 122 gatttttcacctcagatttcctcggatgttgtcaactagagtacaattgtctgggttttg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gatttttcacctcagatttcctcggatgttgtcaactagagtacaattgtctgggttttg 381
Query: 182 aatggataatgaaatggcattgtaggagacaagttttatagatagaggatatagggaggg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aatggataatgaaatggcattgtaggagacaagttttatagatagaggatatagggaggg 441
Query: 242 atagaggttagtaaagtctgacaatattgata 273
||||||||||||||||||||||||||||||||
Sbjct: 442 atagaggttagtaaagtctgacaatattgata 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
