BAC Information

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BAC

Clone NameMSMg01-289B18
Chromosome6 (Build37)
Map Location 128,575,070 - 128,722,093
singlet/doubletdoublet
Overlap geneEG545878, LOC677440, Clec2h, LOC100043863, LOC100043861
Upstream geneEfcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a
Downstream geneKlrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289B18.T7 (MSMg01no289_b18.b1)MSMg01-289B18.TJ (MSMg01no289_b18.g1)
ACCAG418754AG418755
length712711
length of high quality
(start - end)
235 (127 - 361)189 (136 - 324)
definitionCHROMAT_FILE: MSMg01no289_b18.b1 PHD_FILE: MSMg01no289_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:21 2005CHROMAT_FILE: MSMg01no289_b18.g1 PHD_FILE: MSMg01no289_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(128,721,859 - 128,722,093)(128,575,070 - 128,575,256)
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCATTTACAGCCTCTGCTTTCCTTCCCAAGTGTTTATTATTAA
AATGATTTTGATGCAGGGTCTGGACACCCATGCCAAAGATAACAACATCG
AGGGAGGAGGCTCAAGAGTTCAAGCCCAGGCTGGGCTACATAGCTAGAGC
TTGTCTCCGGAAGCTAAGACCCAATAAAACCAATGCTTTGAGGATGAGTT
TTATTTAGCTTGAACTGATTTCCAAGCCCTCCAGCCTTGATGGTGGAAAA
TGTGATATTTGTCCATGACCTTGTCTTTTTCTTGCTAGTATCAAAAGCAG
GTCAACAAATCCTTTTATTTATATGCACCCTCCACCCCAATAATTCTATT
TTAACAATATGTGAGGGATACCCCCACCACAATACACAAATACATGCGAG
GGTATTTTCATATTGCAGACTCTCCATAGAGCCAAGATATGGAAGCCACC
TAATCAAGCACCAGTGGTTGATTGAATAATAACAATGCACAGGTGACTTT
AGTTTCCTCAGTTGCCCATCATAGTCTTATGTCTTAGTAACATTACAAAA
TTAATCAGCAAGGGAGTCAGGTCTTGGACTCAGAACTCTTTCTGATCACT
GCTTCAGTATTTAGTCAGCTTTTCACTACTTTAGTTTGTGTTGCTTTGTT
TTGATTTGTTTN
TACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAAATAGTCTCAACTTTCAG
TACACAAAAATTTCAGCATATTCAACCACCCCAAGCAAAGGTATATAAAG
AACACACCCAAATGCTTATTAGTGATGCTTGTTTCTGCCTATAATCCCTT
TCCTTTGCCAAGATAACAGGAGCCTTAGGTGGGGAGTGTGTGAATAAACT
CTGCAAATATTTAGGTGGCTTATAACCACCTAATAACCTGGAAACCAATG
AAAACTGTGGAGATGCGTTAGATTTTTTTTTAAGGAGATGGCCGAGGCTC
TTAGCAGAAGATTCTAATGGGTTCCCGGGCATCCCCCTTTTACTGAGTTC
TGAAGGTGTCTATGGCTTCCACCAAAAAACAAAAAAATTGTGAAAAGCGC
AGTTCTGAGGTGTGATGTTCTCTTTAACAGGCACTGGCTAAGGCGTGAAG
TGACCAGAAGTGCCCAGAGTCTCATGTGTCTGTGGGCACAGCCAGCTGAG
GTCACTGTGCTTGACACAGAATCTAGAGAACAGCACCAAATACCTGCATA
ACTACTACACAGGCCGAATACCTGCATAACTACTACACAGGCCGAATACC
TGCATAACTACTACTCAGGCCGAATACCTGCTTAACTACTACACAGGCCG
AATACCTGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_b18.b1 MSMg01no289_b18.b1 CHROMAT_FILE:
MSMg01no289_b18.b1 PHD_FILE: MSMg01no289_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:21 2005
         (235 letters)



>mm_chr6_128721578_128722212
          Length = 635

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccatgccaaagataacaacatcgagggaggaggctcaagagttcaagcccaggctgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cccatgccaaagataacaacatcgagggaggaggctcaagagttcaagcccaggctgggc 457

                                                                       
Query: 61  tacatagctagagcttgtctccggaagctaagacccaataaaaccaatgctttgaggatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tacatagctagagcttgtctccggaagctaagacccaataaaaccaatgctttgaggatg 397

                                                                       
Query: 121 agttttatttagcttgaactgatttccaagccctccagccttgatggtggaaaatgtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agttttatttagcttgaactgatttccaagccctccagccttgatggtggaaaatgtgat 337

                                                                  
Query: 181 atttgtccatgaccttgtctttttcttgctagtatcaaaagcaggtcaacaaatc 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atttgtccatgaccttgtctttttcttgctagtatcaaaagcaggtcaacaaatc 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no289_b18.g1 MSMg01no289_b18.g1 CHROMAT_FILE:
MSMg01no289_b18.g1 PHD_FILE: MSMg01no289_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:21 2005
         (189 letters)



>mm_chr6_128574870_128575458
          Length = 589

 Score =  354 bits (183), Expect = e-102
 Identities = 186/187 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaggtatataaagaacacacccaaatgcttattagtgatgcttgtttctgcctataat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 caaaggtatataaagaacacacccaaatgcttattagtgatgcttgtttctgcccataat 260

                                                                       
Query: 61  ccctttcctttgccaagataacaggagccttaggtggggagtgtgtgaataaactctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctttcctttgccaagataacaggagccttaggtggggagtgtgtgaataaactctgca 320

                                                                       
Query: 121 aatatttaggtggcttataaccacctaataacctggaaaccaatgaaaactgtggagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatttaggtggcttataaccacctaataacctggaaaccaatgaaaactgtggagatg 380

                  
Query: 181 cgttaga 187
           |||||||
Sbjct: 381 cgttaga 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)