BAC Information

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BAC

Clone NameMSMg01-289F04
Chromosome6 (Build37)
Map Location 42,303,573 - 42,303,893
singlet/doubletsinglet
Overlap geneZyx
Upstream geneTry10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik
Downstream geneEpha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289F04.T7 (MSMg01no289_f04.b1)MSMg01-289F04.TJ (MSMg01no289_f04.g1)
ACCAG418907AG418908
length738729
length of high quality
(start - end)		320 (44 - 363)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no289_f04.b1 PHD_FILE: MSMg01no289_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:37 2005CHROMAT_FILE: MSMg01no289_f04.g1 PHD_FILE: MSMg01no289_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATAGCAGGAAGTGAAGAGCCTCGGGGACCTTGGGCCATCTTGTGCC
TTGCAAAGAGGATGGAGGAAGATCCCAGGCTGGGATTCTTAGAAGTGGAT
GACGTGACCTTGGAGATCTTCATCATAGGTTTAGGGAACAGGACTCAGCA
GAATTTGACTCTTAGGACTTTGTAGATGGCCTTGGGACTATTTGTGCCAT
ATGGCAGTGACAGAGTTGAGTGAATAGTCAGTGGAAACATGAAAGTTGGT
AGTGTAGCCTGTTCTCAACATTTGGCAGTGAAGTTGAGTATGTTGACCTA
TAAGATACAAAACTTGTAAAGTTGAGACAGGAGGATTGCTATGAGTTCAA
GTCAGACTATAGTGCGCACCCTCTCTCTCTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGGATGTGTGNANNTAANANANNNTATATTTTTAATTTT
TTTTTTTTTAATTTTTTAAACGTTTTTTTTTATTTTTTTTATATTTTTTT
TTATAAATTTTTTAAGAAAATATTATAAATTTTTAATTTAAAAATTTTTT
ACATTATATATTTTTAATAATTTTCGGTTATTTATAATATATTTTTTTAA
ATTATTTTATATATTTATTTTTTTTATTTTCGCATTTTTTTTATTTTTTT
TTTCTCCTCCTTTCTCCACCTTATTTTTTTTTTTTTAT

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATG
AGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCC
TGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCT
GGCTTCTGTTAGTAGGATTTTTACGTTTACCTTTCGCCATCTGGCAATCT
CTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTG
ATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGA
GTTTCAGTGGTCTTATTAGTCTCTGCACCCAAGCTCTCCTCTCTCAGGGA
AGGTGTACAGTTATCCGCCGCTTGGACCTCCTCCTGGCTGAAGGTGAAGG
CCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTG
GCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAATCTCTGTGGCTC
TTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAG
AATCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGGACTCTGTATT
CCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGA
AGGCTCCTGGCGGCGCCTGTGCCACTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_f04.b1 MSMg01no289_f04.b1 CHROMAT_FILE:
MSMg01no289_f04.b1 PHD_FILE: MSMg01no289_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:37 2005
         (320 letters)



>mm_chr6_42303369_42304093
          Length = 725

 Score =  574 bits (297), Expect = e-168
 Identities = 313/321 (97%), Gaps = 5/321 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatagcaggaagtgaagagcctcggggaccttgggccatcttgtgccttgcaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatagcaggaagtgaagagcctcggggaccttgggccatcttgtgccttgcaaa 264

                                                                       
Query: 65  gaggatggaggaagatcccaggctgggattcttagaagtggatgacgtgaccttggagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaggatggaggaagatcccaggctgggattcttagaagtggatgacgtgaccttggagat 324

                                                                       
Query: 125 cttcatcataggtttagggaacaggactcag-----cagaatttgactcttaggactttg 179
           ||||||  |||||||||||||||||||||||     ||||||||||||||||||||||||
Sbjct: 325 cttcattgtaggtttagggaacaggactcagataagcagaatttgactcttaggactttg 384

                                                                       
Query: 180 tagatggccttgggactatttgtgccatatggcagtgacagagttgagtgaatagtcagt 239
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 tagatggccttgggactatttgtgccatatggcggtgacagagttgagtgaatagtcagt 444

                                                                       
Query: 240 ggaaacatgaaagttggtagtgtagcctgttctcaacatttggcagtgaagttgagtatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaaacatgaaagttggtagtgtagcctgttctcaacatttggcagtgaagttgagtatg 504

                                
Query: 300 ttgacctataagatacaaaac 320
           |||||||||||||||||||||
Sbjct: 505 ttgacctataagatacaaaac 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 725
Length adjustment: 9
Effective length of query: 311
Effective length of database: 716
Effective search space:   222676
Effective search space used:   222676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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