Query= MSMg01no289_j23.b1 MSMg01no289_j23.b1 CHROMAT_FILE:
MSMg01no289_j23.b1 PHD_FILE: MSMg01no289_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:58 2005
(239 letters)
>mm_chr6_22585571_22586209
Length = 639
Score = 439 bits (227), Expect = e-128
Identities = 236/239 (98%), Gaps = 1/239 (0%)
Strand = Plus / Plus
Query: 1 ttattatttttacatattttatttccaacccactagaatttttcatgtgtcaatgaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattatttttacatattttatttccaacccactagaatttttcatgtgtcaatgaaata 260
Query: 61 ggctcatgttcactaaattcatttgtttctcgtgtaaacttcctgaaatctgaataaaga 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ggctcatgttcactaaattcatttgtttctcatgtaaacttcctgaaatctgaataaaga 320
Query: 121 gaaggatttcttctcatgtgcagatgagtatgaggatagagtctaaatacaaatatttaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggatttcttctcatatgcagatgagtatgaggatagagtctaaatacaaatatttaa 380
Query: 181 aaaaaaattatagagactgcccagttccatttcacctgcttcttctcatctatatataa 239
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaa-ttatagagactgcccagttccatttcacctgcttcttctcatctatatataa 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no289_j23.g1 MSMg01no289_j23.g1 CHROMAT_FILE:
MSMg01no289_j23.g1 PHD_FILE: MSMg01no289_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:58 2005
(594 letters)
>mm_chr6_22790473_22791468
Length = 996
Score = 973 bits (503), Expect = 0.0
Identities = 570/597 (95%), Gaps = 10/597 (1%)
Strand = Plus / Minus
Query: 4 aagattactgtttctcaagataactgatgagaaagcagatattaaaaggatgacatggat 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aagattactgtttctcaagagaactgatgagaaagcagatattaaaaggatgacatggat 737
Query: 64 ttaaagtagctgacatcaatagggagtaggtataacataaccttatatctaattacaaag 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttaaagtagctgacatcagtagggagtaggtataacataaccttatatctaattacaaag 677
Query: 124 gacaccaat--aaatggaatggaagccattcaacaagtcttgggagtaagggagaagctg 181
||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 676 gacaccaataaaaacgtaatggaagccattcaacaagtcttggtagtaagggagaagctg 617
Query: 182 aaacaagtaatgag----cattttattcaaaagctctaagatgtagaaaatttaaaaagg 237
|||||||||||||| || |||| ||||||||||||| ||||||||| |||||||
Sbjct: 616 aaacaagtaatgagcaaaca----attcgaaagctctaagatatagaaaattgaaaaagg 561
Query: 238 aagctggtgtagaaacaaggatttaatttcttgggccatggagatttaattttaaaacac 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 560 aagctgttgtagaaacaaggatttaatttcttgggccatggagatttaattttaaaatat 501
Query: 298 aacgcacaataggtagctattcataatctgggtgaagaaacactctctatatttgcatta 357
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaggtacaataggtagctattcataatctgggtgaagaaacactctctatatttgcatta 441
Query: 358 acatatggaaccatcaataaagcaaaagatgctttgtttccaaagatattttggactgca 417
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 acatatggaaccatcaataaagcaaaagacgctttgtttccaaagatattttggactgca 381
Query: 418 cttaatatctgaaatagtgtatactaagacaacgagtatcagaagcactagagcaatgaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttaatatctgaaatagtgtatactaagacaacgagtatcagaagcactagagcaatgaa 321
Query: 478 aaagttttaacagaaaaggcagcactattgtgcagcatctaatgttgtcaataaaaattc 537
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 aaagttgtaacagaaaaggcagcactactgtgcagcatctaatgttgtcaataaaaattc 261
Query: 538 aataactcattgccttagccaactgtttccttaattattctataatggttcatcacg 594
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aataactcactgccttagccaactgtttccttaattattctataatggttcatcacg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 996
Length adjustment: 10
Effective length of query: 584
Effective length of database: 986
Effective search space: 575824
Effective search space used: 575824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
