CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTCTCCTTATTAAGATCAGACTGGGTGCTTGACATGGCATCTT
GGTGAAAACTTTACTATTCTTTGACGTTTTCTACCTAAAACTTCTGTGGA
ATAGCAAGTCATCCATCTCCACTTGCTTTACCACTGTTCATGTGTGTGGC
TACTGTTTGTGTATGTGGTATGTATATGTGTGTGAGGTTTTGTATTCATG
AATGAGTTTATGTATAAACACGGTACCAGATACCTCTAGCTATCCATATA
GTTTACTTTCTTCCATTTATGATTTATATAAGTTAAAATATTTAAATTTC
AGTATATTTTATTTCCATTATTTAAATGCCGAACACGCGTTATGAGACCA
GTATGTGCCCTGCTCTGTTACACCACATTATATGAACACTGTGATAATAT
TTTAAACTATAAATTGACCTACTTACAAGCAAGAATTGGCTTTTTTTAAT
GACAAAAAAGAAAGATTACTGTACATCTGGTTAGACACCTTGGCAATACT
CATAAGGCACAGACTGATAACATTTTTAATAGATAATTTTTGTATTATTA
TTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNNNNNT
TNNTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTT
TTTTTTTTTTTTCCTTTTTTTTTTTNTTTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAAACTATATATCTAAAATAAGGGCTGTC
CTAGTGGAATTTAAAATAGTTTTTACCTATAAAAGAAGATTTATATATTA
ATATTGTAAACATAAAAGAAGCTTAAAATAAAATGAACATTACTATTATA
AAGAGTCTTGATTTTTGTTATCTCAAAAAAGGATTTATTCTAAGCATATA
ATTTATGAATTTTTTTTAAATCAAGCACAGTGGAATTATCATTCCAAAGA
AACTAGAGTGGGCTATCCCGAAGATTTGGATAGTATCAGCACTGTGTGAA
ATTTATAAAAGACTTATGATTACTCACGCGCTGGATAACACACTCAGAGG
GATAGGTAACTCTAACAAGCTACACCATATCTCCCTTTTAGGGAAGCTCA
TCCTAGGATCCTCTAGAAAGGCTCAAGATGGTAAGGTCTATGCACAATGT
AAAGGATAAGCTTATGAAGCTGATATTTTTGAGGTTGCAAGTTTTCCTTA
TGTGGTATATATGTATGTGAAAAATTCCCTAGCACCTTATTTTTGGATGT
AGATGAGATGCACAGAAATCCTGAATAAACATAGGGACACATGGTAACCA
AGATACAGATGCACCTTCTTGTATTTATTTGAGTCCAATTTTTGAGAGTG
GCTGAGGTCTCTGACTGAACTCATGACTGA

Query= MSMg01no289_l21.b1 MSMg01no289_l21.b1 CHROMAT_FILE:
MSMg01no289_l21.b1 PHD_FILE: MSMg01no289_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:07 2005
         (327 letters)



>mm_chr6_75818605_75819331
          Length = 727

 Score =  592 bits (306), Expect = e-173
 Identities = 318/322 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttctctccttattaagatcagactgggtgcttgacatggcatcttggtgaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattctttctctccttattaagatcagactgggtgcttgacatggcatcttggtgaaaa 418

                                                                       
Query: 65  ctttactattctttgacgttttctacctaaaacttctgtggaatagcaagtcatccatct 124
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctttactattcattgatgttttctacctaaaacttctgtggaatagcaagtcatccatct 358

                                                                       
Query: 125 ccacttgctttaccactgttcatgtgtgtggctactgtttgtgtatgtggtatgtatatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccacttgctttaccactgttcatgtgtgtggctactgtttgtgtatgtggtatgtatatg 298

                                                                       
Query: 185 tgtgtgaggttttgtattcatgaatgagtttatgtataaacacggtaccagatacctcta 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 297 tgtgtgaggttttgtattcatgaatgagtttatgtataaacacggtactagatacctcta 238

                                                                       
Query: 245 gctatccatatagtttactttcttccatttatgatttatataagttaaaatatttaaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gctatccatatagtttactttcttccatttatgatttatataagttaaaatatttaaatt 178

                                 
Query: 305 tcagtatattttatttccatta 326
           ||||||||| ||||||||||||
Sbjct: 177 tcagtatatcttatttccatta 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no289_l21.g1 MSMg01no289_l21.g1 CHROMAT_FILE:
MSMg01no289_l21.g1 PHD_FILE: MSMg01no289_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:07 2005
         (280 letters)



>mm_chr6_75673616_75674295
          Length = 680

 Score =  505 bits (261), Expect = e-147
 Identities = 273/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   aacacactcagagggataggtaactctaacaagctacaccatatctcccttttagggaag 62
           |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 203 aacacattcagagggataggtaactctaacaagccacaccatatctcccttttagggaag 262

                                                                       
Query: 63  ctcatcctaggatcctctagaaaggctcaagatggtaaggtctatgcacaatgtaaagga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctcatcctaggatcctctagaaaggctcaagatggtaaggtctatgcacaatgtaaagga 322

                                                                       
Query: 123 taagcttatgaagctgatatttttgaggttgcaagttttccttatgtggtatatatgtat 182
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taagcttatgaagctggtatttttgaggttgcaagttttccttatgtggtatatatgtat 382

                                                                       
Query: 183 gtgaaaaattccctagcaccttatttttggatgtagatgagatgcacagaaatcctgaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtgaaaaattccctagcaccttatttttggatgtagatgagatgcacagaaatcctgaat 442

                                                
Query: 243 aaacatagggacacatggtaaccaagatacagatgca 279
           ||||||||||| |||||||||||||||||||||||||
Sbjct: 443 aaacatagggagacatggtaaccaagatacagatgca 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)