BAC Information

Click to search

BAC

Clone NameMSMg01-289M15
Chromosome6 (Build37)
Map Location 18,292,230 - 18,292,548
singlet/doubletsinglet
Overlap genenone
Upstream geneMet, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr
Downstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289M15.T7 (MSMg01no289_m15.b1)MSMg01-289M15.TJ (MSMg01no289_m15.g1)
ACCAG419244AG419245
length743744
length of high quality
(start - end)
367 (45 - 411)311 (420 - 730)
definitionCHROMAT_FILE: MSMg01no289_m15.b1 PHD_FILE: MSMg01no289_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:10 2005CHROMAT_FILE: MSMg01no289_m15.g1 PHD_FILE: MSMg01no289_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGTACCAATACAGAATGGCTGAGAAGCACCTAAAGAAATGT
TCAACATCCTTAGTTATCAGGCCCATGCAAATCAAAACAACCCTGAGATT
CTACTTCATACCAGTCAGAATGACTAAGATCAAAAACTCAGGTGACAACA
GATGCTGGCGAGGTTGTGGCAAAAGAGGAACCCTCCTCCATTGCTGGGAT
TACAAGCTGGTACAACTACTCTGGAAATCAGTTTGGCAGTTCCTCAGAAA
ATTTAATGTAATGCTACCCGAGGACCCACTAATACCACTCCTGGCATCTA
CCCAGAAGATGCTCCAATATGTAATAATGACACATGCTCTACTATGTTCA
TAGCACCCTTATCCCCCCCAACCAGAAGCTGGAAAGAACCCAGATGTCCC
TCAGCAGAGGAATGGATACAGAAAATGTGGTATATTTATACAATGGAATA
CTACTCAGCTATTAAAAACAGTGAATTCATGAAATTCTTAGGCAAATGGA
TGGAATTAGAAAATATCCTGAGTGAGGTTACCCAATCACAAAAGAACACA
CATGGTATACACTCACTGATAAGTGGATACTAGCCCAGAAGCTCAGAATA
CCCAAGATACCATTTAAAGACAAAATGAAGCTCAAGAAGAACGAAGACCA
AAGCATGGATACTTTGGTCCTTCTTAGAAGGCGAAACAAATAC
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTCAAGTGTTCTTAGAGAATAAGGGA
TGACACTCATATTGCTAAATCTAGGCAACAGTCCTTGCCTTATTTAATCA
ATCTACAACATTTAAAATTGGTCACTATTATTTTTCTTAAAACACATTCT
TAAACTGGATTTGAACACCTTCAGAGTTTTCCTTTCTACAACACCCCATC
TTCCCTCTCTTTCCAAGTTACATTGTTTCATACTTTCTCCACCATATTTA
CCCAAAGCCTCAATCATCTAATCTAGCTAGGCCTTCTAGGAATTTAAGTT
GCCTACAGTATTCTTACGAACCACCACAAAATATCAGTGCTGAGGGCTGG
GGCTATATTCCCCCCCAAGAAAACTTGCTTAGTAGCCATGAGGCTTTTGG
GTTCAATCCTTAGCACCACATCTGTGTATATCCATAGCTCATTTTGCATG
CACCTGAACTGCACAAAGAGATATCTCAAAAACCAAACTGTCAAGGTTGA
GTCAATGTTCTCCAACAAGCACCAGAAGTTGTCCTATAGTTCTCATTGGC
TCCATGGTAAAACTAATAAATAAGACGTGCCTCATGCCTCCTGTGTTAAA
CACAATCTGTAGGTCTTCATTTTGGTAATTTGTATTTGATGATTTTGTAT
TTCTGGATTCCTCTCAACTTCAGGCTCATATGTTCACTGTCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_m15.g1 MSMg01no289_m15.g1 CHROMAT_FILE:
MSMg01no289_m15.g1 PHD_FILE: MSMg01no289_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:10 2005
         (311 letters)



>mm_chr6_18291966_18292676
          Length = 711

 Score =  551 bits (285), Expect = e-161
 Identities = 307/319 (96%), Gaps = 8/319 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacttgcttagtagccatgaggcttttgggttcaatccttagcaccacatctgtgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aaaacttgcttagtagccatgaggcttttgggttcaatccttagcaccacatctgtgtat 524

                                                                       
Query: 61  atcc--------atagctcattttgcatgcacctgaactgcacaaagagatatctcaaaa 112
           ||||        ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atccatgtaccaatagctcattttgcatgcacctgaactgcacaaagagatatctcaaaa 464

                                                                       
Query: 113 accaaactgtcaaggttgagtcaatgttctccaacaagcaccagaagttgtcctatagtt 172
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 463 accaaactgccaaggttgagtcaatgctctccaacaagcaccagaagttgtcctatagtt 404

                                                                       
Query: 173 ctcattggctccatggtaaaactaataaataagacgtgcctcatgcctcctgtgttaaac 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctcattggctccatggtaaaactaataaataagacgtgcctcatgcctcctgtgttaaac 344

                                                                       
Query: 233 acaatctgtaggtcttcattttggtaatttgtatttgatgattttgtatttctggattcc 292
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 343 acaatctgtaggtcttcattttggtaatttatatttgatgtttttgtatttctggattcc 284

                              
Query: 293 tctcaacttcaggctcata 311
           |||||||||||||||||||
Sbjct: 283 tctcaacttcaggctcata 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)