BAC Information

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BAC

Clone NameMSMg01-289P21
Chromosome6 (Build37)
Map Location 36,392,871 - 36,393,101
singlet/doubletsinglet
Overlap genenone
Upstream geneMtpn, LOC100039312, LOC100039327, 9330158H04Rik
Downstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289P21.T7 (MSMg01no289_p21.b1)MSMg01-289P21.TJ (MSMg01no289_p21.g1)
ACCAG419394AG419395
length735728
length of high quality
(start - end)
234 (135 - 368)644 (75 - 718)
definitionCHROMAT_FILE: MSMg01no289_p21.b1 PHD_FILE: MSMg01no289_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:25 2005CHROMAT_FILE: MSMg01no289_p21.g1 PHD_FILE: MSMg01no289_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCAGTTGTTTACAGAGAGTTTCATCGTGTCAAAATCATGACAGAC
ACCACATGAGAAGGAGAAATTTCCCACACAACTGTGACTCAGAGTCGCCA
CCCCTAGAGTACAGGCTCATGAAATGGGCCCTGCAGTCACAATTAGTAAA
GTTAAAATGATTCCCTGGTATTCAATGATGCTTATGATTCCTGCAATTCC
TGATCTTCTCAAGTGGAAATCTGCATGTATATATGTATTTGTATATTGCT
TTTTTGAGACAGGGTTTCTCTATCTAGTGCCGCCTGTCCTGGAACTCTCT
TGAAGACCAGGCTGGTCTTGTATCTCATTGCAATCCACCTGCCTCTGCCT
GCCAAGCACTGGCATTAAAGGAGCGCGCCACTATATCCAACTGATATATC
AGATAGTTGGGTTAATCTCAACTCCTAGCAGAGAATCAAAATTGATTTTT
GCATTTTGATGTTAAGTATAAAGTATTACTTGAATCTCATCGATCAGGGA
TATGAACCCATAAACATGAGGAAACAAACAAGAAAAAGAAGCAGAGGAGA
ATGCAGGAAAGAAATTCAATAATGGTTGGACCCTGGGTCAAATCTCAGCT
TTCTGCATGTATGACCTTGCTCCAATTATTTATCTCCTGTGAATCTCAAG
GTTCCCATGAGCAGGCTAAGATAAACAGCACTGTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGCGAAAATCTCAAAAGGAATCCGATCTCTAATGGCTGA
AAAACACCTAAGGACTTTTTCACTGTCCTTAGTCAGCAGGAAAATGGCAA
ATCAAAACTACTCTGAGATTCCACCTTACCTCCATCAAAACGGCTAAGAC
ACTCAAGTGACAGCACATTCTGGTGGGGATGCAGAGCAAGGGGAACAGTT
TTCCATTGTCGGGGGAGTGTTGCCCAAGCTAGTATCTCGCAGGCAAGAAT
TCACTCGGACAACCGGATCCTTCTATTTTAAAGCTTTTATTGCTTCAACT
TAAGGAAGACCCCGAACCCGGAAAATGGCGCCGCGTACTATAGCCTGCAG
CGTGATGTTTCAGCACCTGACGTGGCGTGACAGCACCTGATTAGTTGCTC
GCCTATCACCCCATTACTATGCCCCGAGATGGGCAGTGACTGGGCGTGAA
CTCACTCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGGCACAGTGG
AAGCCAGCGCCATCTTATAATGGCGATTGCTCACGGCACGGCACTCCACA
GGGGAGTGCAAACATATACACCCATTCTGGAAGTCAATTTGGGTGTTTAT
TAGAAAATTGGAAATATTTTCTAATGGGAAAAGGGGAATACATGCATGGT
ATGTACTCATTTATAAGTGGATATTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_p21.b1 MSMg01no289_p21.b1 CHROMAT_FILE:
MSMg01no289_p21.b1 PHD_FILE: MSMg01no289_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:25 2005
         (234 letters)



>mm_chr6_36392671_36393304
          Length = 634

 Score =  385 bits (199), Expect = e-111
 Identities = 223/231 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgactcagagtcgccacccctagagtacaggctcatgaaatgggccctgcagtcacaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactcagagtcgccacccctagagtacaggctcatgaaatgggccctgcagtcacaatt 260

                                                                       
Query: 61  agtaaagttaaaatgattccctggtattcaatgatgcttatgattcctgcaattcctgat 120
           | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 261 actaaagttaaaatgattccctgatattcaatggtgcttatgattcctgcaattcctgat 320

                                                                       
Query: 121 cttctcaagtggaaatctgcatgtatatatgtatttgtatattgcttttttgagacaggg 180
           |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 cttctcaagtggaaatctgggtgtatatatgtatttgtatattacttttttgagacaggg 380

                                                              
Query: 181 tttctctatctagtgccgcctgtcctggaactctcttgaagaccaggctgg 231
           |||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 381 tttctctatctagtgccgtctgtcctggaactctcttgtagaccaggctgg 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)