Query= MSMg01no290_b23.b1 MSMg01no290_b23.b1 CHROMAT_FILE:
MSMg01no290_b23.b1 PHD_FILE: MSMg01no290_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:34 2005
(622 letters)
>mm_chr6_27922000_27923022
Length = 1023
Score = 982 bits (508), Expect = 0.0
Identities = 529/536 (98%), Gaps = 2/536 (0%)
Strand = Plus / Minus
Query: 1 tctagttctctctttcagacattcccttctaaatacttagaaaaggtcaggctctgtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tctagttctctctttcagacattcccttctaaatacttagaaaaggtcaggctctgtcac 477
Query: 61 atttgaagtgtggtctctgaaattactttttcctgttacctaactccca-ttgccaattg 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 476 atttgaagtgtggtctctgaaattactttttcctgttacctaactcccatttgccaattg 417
Query: 120 cattaggtacttcaggatactgtaacaaactaccataaatcaggtatgcttaaagcaaac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cattaggtacttcaggatactgtaacaaactaccataaatcaggtatgcttaaagcaaac 357
Query: 180 aattctattgtttaggggctctaaatggctagatgctccagatgaaacaaagtattagca 239
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 356 aattctattgtttaggggctctaaatggctggatgctccagatgaaacaaagcattagca 297
Query: 240 agacccaaccccctaccctctcacacttccctttgagttgtatattaatggccaatctgc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agacccaaccccctaccctctcacacttccctttgagttgtatattaatggccaatctgc 237
Query: 300 catttcctgcaggtctacagtgtcactgtgatctgtgtgatattgaatgagggactcatc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 catttcctgcaggtctacagtgtcactgtgatctgtgtgatattgaatgagggactcatc 177
Query: 360 ttacttcaggatgacttcattttaatttgattaattaaagctacaatggcccttttacaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ttacttcaggatgacttcattttaatttgattaattaaagctacaatggcccttttacaa 117
Query: 420 gtacagtcacattcagaaatactatgctttaaaaggtttttttttgggg-ggggtgggga 478
||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||
Sbjct: 116 gtacagtcacattcagaaatactatgccttaaaaggttttttttgggggtggggtgggga 57
Query: 479 gcgtaatttaatcaatgacaccaaatatagttactggttgaactctgattggtgga 534
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 gcataatttaatcaatgacaccaaatatagttactggttgaactctgattggtgga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1023
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1013
Effective search space: 619956
Effective search space used: 619956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_b23.g1 MSMg01no290_b23.g1 CHROMAT_FILE:
MSMg01no290_b23.g1 PHD_FILE: MSMg01no290_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:35 2005
(295 letters)
>mm_chr6_27760952_27761646
Length = 695
Score = 536 bits (277), Expect = e-157
Identities = 289/293 (98%)
Strand = Plus / Plus
Query: 1 ctcagcccaagtgaaaacaaatcttatttcttcacttttcaaaatggaaccctgttaaaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 201 ctcagcccaagtgagaacaaatcttatttcttcacttttcaaaatggaaccttgttacaa 260
Query: 61 tcaaagcaagccaatcagagcccttcctagtactgtaataaatgtgtttaaaagtgttct 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tcaaagcaagccaatcagagcccttcctagtactgtaataaatgtgtttgaaagtgttct 320
Query: 121 gctagtattagccaaaaaagcttgcaatacccacgatacaactcaaagaccatatgaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctagtattagccaaaaaagcttgcaatacccacgatacaactcaaagaccatatgaaac 380
Query: 181 ccaagaagaaagaagatcacaccagagtgtagatgctacagtcctactcagtaggggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaagaagaaagaagatcacaccagagtgtagatgctacagtcctactcagtaggggaaa 440
Query: 241 gagaaaaatctctgggaagtagagatagagaggaatctgggagggagaaagga 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaaaaatctctgggaagtagagatagagaggaatctgggagggagaaagga 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
