Query= MSMg01no290_c06.b1 MSMg01no290_c06.b1 CHROMAT_FILE:
MSMg01no290_c06.b1 PHD_FILE: MSMg01no290_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:36 2005
(288 letters)
>mm_chr6_54394948_54395637
Length = 690
Score = 480 bits (248), Expect = e-140
Identities = 279/290 (96%), Gaps = 2/290 (0%)
Strand = Plus / Minus
Query: 1 ttgtaaaag--gtgtggtggtggtgggggagaagcaagcaccagaaatttcacctgccaa 58
||||||||| ||||||||| || ||||| | | ||||||||||||||||| |||||||
Sbjct: 302 ttgtaaaaggtgtgtggtggggggggggggggtggaagcaccagaaatttcaactgccaa 243
Query: 59 ttagtaatgaccaaagcaataatgcaaaattgcaaggagtctgtggtagatcaattctac 118
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttagtactgaccaaagcaataatgcaaaattgcaaggagtctgtggtagatcaattctac 183
Query: 119 aacaccagtgctcaggaagtggaggcaagaaaggtacatgttcgagaccagcctgagctc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aacaccagtgctcaggaagtggaggcaagaaaggtacatgttcgagaccagcctgagctc 123
Query: 179 tacagtgagcctttcaagcaagcaaggaaacaaacaaaaccattgtaggccacccagggg 238
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 122 tacagtgagcctttcaagcaagcaaggaaacaaacaaaactattgtaggccacccagggg 63
Query: 239 agactggacagagctggggttttcattgtggaactgcccgcccacatcag 288
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 agactggacagagctggggttttcattgtggaactgcccgcccacatcag 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 690
Length adjustment: 9
Effective length of query: 279
Effective length of database: 681
Effective search space: 189999
Effective search space used: 189999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no290_c06.g1 MSMg01no290_c06.g1 CHROMAT_FILE:
MSMg01no290_c06.g1 PHD_FILE: MSMg01no290_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:36 2005
(510 letters)
>mm_chr6_54223824_54224734
Length = 911
Score = 957 bits (495), Expect = 0.0
Identities = 507/511 (99%), Gaps = 1/511 (0%)
Strand = Plus / Plus
Query: 1 tttccttctgagaccactgattgtgggaatgcaattgaacatcaggcaaagggaaccatt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tttccttctgagaccactgattgtgggaatgcaattgaacatcagggaaagggaaccatt 260
Query: 61 tctgctcctgccgctgaggagggggtcagcccttcctagggatatgtatgcaactattcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgctcctgccgctgaggagggggtcagcccttcctagggatatgtatgcaactattcg 320
Query: 121 tttccattccatagtccagtctgtctctctgcctctgggtgtagggagcacgaagcttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccattccatagtccagtctgtctctctgcctctgggtgtagggagcacgaagcttgg 380
Query: 181 gcctttacttgctatccttaaaggaaggaatggaagccttcagtcctatgcatttagcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctttacttgctatccttaaaggaaggaatggaagccttcagtcctatgcatttagcca 440
Query: 241 tgagctggagaggatcttggggtatctcccatcttaatctttctccctttactgaatggc 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tgagctggagaggatcttggggtatctcccatcttaatctttctcccattactgaatggc 500
Query: 301 caaaggtctgatttggagtgtgaaatgtccgtatttatttcctccttatgattttctatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaggtctgatttggagtgtgaaatgtccgtatttatttcctccttatgattttctatc 560
Query: 361 ttaacctctgtgaccctctcattccttaagacggtgtttttctgacttttggggcatcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaacctctgtgaccctctcattccttaagacggtgtttttctgacttttggggcatcct 620
Query: 421 gtggacgcactcccaggcatgacaggatgggtcttgctggatttgcaaatccctttcctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtggacgcactcccaggcatgacaggatgggtcttgctggatttgcaaatccctttcctt 680
Query: 481 cctctccaaact-ccagtgactttgctctga 510
|||||||||| | ||||||||||||||||||
Sbjct: 681 cctctccaaaattccagtgactttgctctga 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space: 450500
Effective search space used: 450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
