CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGG
AATTCATTCTTCATTTCCATCAGCTGTGCACAGTTCCCACTCCTCTGTTG
TGATTGTGAGTCTCATCTTCCATCCCTGCCACAAATGCTCATGGATACAA
GAGGAAGTGATGAAGACACATGGTCTCAGCAATCCCAACCCTGAAATCTG
TGTCCTTTTATATAAAATAGTATATTTGTGGCTATAACTTAGAAAAATAG
AGTTGAACTATATAGCACCATGAACATTTTCAGTTCAGTGGTCTGAAAAT
ATATGATTGATAAAATGGGATTAATCATTCAAAATACCAAGAGTTTGTGA
TTAGGAAACCTAACATGGGCCTGCTTGTCTACTCCACATTTTCCTACTTT
AAACCAAAGAAAATTCTATTTTTATGTAAGCTTATTATAAGGTTTGAGAC
ACATCAGAAAGAATTGTATAATTTTTATTTCTTTCTTAAAAATTTTAAAA
CATTTAGCCATGTATTAAGTGACTTTTACTTTATTTTATTTATATTTTAA
TAGGAAACCATTCTGAAATAATCTATGAAACATTTTTTGGAGCTAGAGTA
ATTGGAATCTATACTTTAATGTTGGATAAAATTTAATCCATCTGATATAA
TATACAATGTCTAGTCCTTTTTATTGGGTGTAACTTATAATAATTTTAAT
TGCTATAAATAATGTTGCAATANATGTTTCTGTCTATATAGCTTTTTATT
TTC

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGGACTAGCCAAAGGAACACCTG
CCTCTGCCATTTTCCTGGAGAGTGACTCTGAGGCTGTTTACTTAAAAGGA
AAAGTGGGGGAAACATTGAGCACCTACTGTCTACCCAATACTGTATTGAC
AATTCAGATGAAATATCTAGTTAATTTCTATAATAAATTGGGTGGCATAG
ATTTATATCTTATAGATAAGAAACTTAAAACTCAGAGCCTGCAAGATCAA
ACTCCTGATTACAAACCCCACTCCAGAGGCTTACCCTCATCTGCTAAGCA
GACAGCATCTTTGCCTTGATTGCTAGAGAAACCGGTATTGAAGGGTTGGT
TTCTATGGTCTCTTCCAGGCTCCTGTGATACCAGAAGAATCTGTCCATTA
AGGCTCTTTCTGTGGGAAGCTTTGAATGGACAAGCCACGCTGAGAAAACC
TTCTAAGTCTGGTCTGATGTACTGTTTAGCATGGCTTTAAGACAGACATT
GAGGCTGGCGCTGCTAGATAATAGCATAGTGACCTTTGGTCATTGGTCCA
AATTATCTTCATCAGTCATCCTGTGACACCCCTTGTTTCTTGTAAAGGAG
ACTCGAAAGTGCTGCTTCGGTTCACTGTCATCTGAAGAAGGGCCACTGGG
TCCATTATTTACAGCCTCTGGAACTTGTTGAGTGAGTTTATCATCATTAC
TTGN

Query= MSMg01no290_c21.b1 MSMg01no290_c21.b1 CHROMAT_FILE:
MSMg01no290_c21.b1 PHD_FILE: MSMg01no290_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:39 2005
         (679 letters)



>mm_chr6_55601173_55602251
          Length = 1079

 Score = 1261 bits (652), Expect = 0.0
 Identities = 672/679 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgcacagttcccactcctctgttgtgattgtgagtctcatcttccatccctgccacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgcacagttcccactcctctgttgtgattgtgagtctcatcttccatccctgccacaa 260

                                                                       
Query: 61  atgctcatggatacaagaggaagtgatgaagacacatggtctcagcaatcccaaccctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctcatggatacaagaggaagtgatgaagacacatggtctcagcaatcccaaccctga 320

                                                                       
Query: 121 aatctgtgtccttttatataaaatagtatatttgtggctataacttagaaaaatagagtt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttgtgtccttttatataaaatagtatatttgtggctataacttagaaaaatagagtt 380

                                                                       
Query: 181 gaactatatagcaccatgaacattttcagttcagtggtctgaaaatatatgattgataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaactatatagcaccatgaacattttcagttcagtggtctgaaaatatatgattgataaa 440

                                                                       
Query: 241 atgggattaatcattcaaaataccaagagtttgtgattaggaaacctaacatgggcctgc 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgggattaatcacacaaaataccaagagtttgtgattaggaaacctaacatgggcctgc 500

                                                                       
Query: 301 ttgtctactccacattttcctactttaaaccaaagaaaattctatttttatgtaagctta 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 ttgtctactccacattttcctactttaaacaaaagaaaattctatttttatgtaagctta 560

                                                                       
Query: 361 ttataaggtttgagacacatcagaaagaattgtataatttttatttctttcttaaaaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ttataaggtttgagacacatcagaaagaattgtataatttttatttctttcttaaaattt 620

                                                                       
Query: 421 ttaaaacatttagccatgtattaagtgacttttactttattttatttatattttaatagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaaaacatttagccatgtattaagtgacttttactttattttatttatattttaatagg 680

                                                                       
Query: 481 aaaccattctgaaataatctatgaaacattttttggagctagagtaattggaatctatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaccattctgaaataatctatgaaacattttttggagctagagtaattggaatctatac 740

                                                                       
Query: 541 tttaatgttggataaaatttaatccatctgatataatatacaatgtctagtcctttttat 600
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttaatattggataaaatttaatccatctgatataatatacaatgtctagtcctttttat 800

                                                                       
Query: 601 tgggtgtaacttataataattttaattgctataaataatgttgcaatanatgtttctgtc 660
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 801 tgggtgtaacttataataattttaattgctataaataatgttgcaataaatgtttctgtc 860

                              
Query: 661 tatatagctttttattttc 679
           |||||||||||||||||||
Sbjct: 861 tatatagctttttattttc 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no290_c21.g1 MSMg01no290_c21.g1 CHROMAT_FILE:
MSMg01no290_c21.g1 PHD_FILE: MSMg01no290_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:39 2005
         (369 letters)



>mm_chr6_55755561_55756329
          Length = 769

 Score =  704 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgaagggttggtttctatggtctcttccaggctcctgtgataccagaagaatctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tattgaagggttggtttctatggtctcttccaggctcctgtgataccagaagaatctgtc 509

                                                                       
Query: 61  cattaaggctctttctgtgggaagctttgaatggacaagccacgctgagaaaaccttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cattaaggctctttctgtgggaagctttgaatggacaagccacgctgagaaaaccttcta 449

                                                                       
Query: 121 agtctggtctgatgtactgtttagcatggctttaagacagacattgaggctggcgctgct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 448 agtctggtctgatgtactgtttagcatggctttaagacagacattgaggctggcactgct 389

                                                                       
Query: 181 agataatagcatagtgacctttggtcattggtccaaattatcttcatcagtcatcctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agataatagcatagtgacctttggtcattggtccaaattatcttcatcagtcatcctgtg 329

                                                                       
Query: 241 acaccccttgtttcttgtaaaggagactcgaaagtgctgcttcggttcactgtcatctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acaccccttgtttcttgtaaaggagactcgaaagtgctgcttcggttcactgtcatctga 269

                                                                       
Query: 301 agaagggccactgggtccattatttacagcctctggaacttgttgagtgagtttatcatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agaagggccactgggtccattatttacagcctctggaacttgttgagtgagtttatcatc 209

                   
Query: 361 attacttg 368
           ||||||||
Sbjct: 208 attacttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)