BAC Information

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BAC

Clone NameMSMg01-290E04
Chromosome6 (Build37)
Map Location 129,304,999 - 129,305,156
singlet/doubletsinglet
Overlap geneClec12a
Upstream geneTulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik
Downstream gene4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290E04.T7 (MSMg01no290_e04.b1)MSMg01-290E04.TJ (MSMg01no290_e04.g1)
ACCAG419588AG419589
length803820
length of high quality
(start - end)
158 (133 - 290)44 (73 - 116)
definitionCHROMAT_FILE: MSMg01no290_e04.b1 PHD_FILE: MSMg01no290_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:45 2005CHROMAT_FILE: MSMg01no290_e04.g1 PHD_FILE: MSMg01no290_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTTCATTGGTCCTAATAATTCTGTGAAATATATGTTTAGCGT
TTGTTTCTTCTCCATCATTGCCCCTTAAATATCTACATATATATCAACCT
ATCTGGGTTAAGCTGGCATTTTTTTTTTGCCTACTCAACAAAAGATATAA
CAAAAGATCTAATATAATGACAATAGAGAATATGCACCATGTGGTTTTTA
TGGAAGTGGTGAGCCTGCGCCATGATCGACATCCACTGTGTCTTTGGAAA
ACTATTCCCAAGACCCACACTTTTTTTTTTCTTCTACATATCCACCTTGG
CCCNACCCCTTTAGGGATGACCCCCGGGACGGAGCCCCCAAGAAAAAAGA
TATGGGAGGGGGGGGGGGGNNNNTTAAAAAAANAAAANNNAAAGGGTGGG
GGGTGGGGGGGGGTTTTTTTTANTTTTATTTATTTTTTTTTTATTTTTAT
ATTATAATTTCAGTTNAGTTTTTTTATTAATTTTTAATATTAAATAATAT
TTTATTGAGATATGTTTATAATTATATTATATAGGTTTATAAATATGTAT
TTAATTACTTGTTAATTTTCAGATAAGTTGAGTTTTAGATATACCCATTC
CTACTCCTTATTTCTATTTCCTCCCCCATCACCCCCCTCCCATCAATTTA
AATACCCTTCTTATCACCCTTACCCCCCTTAACCTTCTCACCATATACCA
ATTAATATACGTATTTAACATCCATCCATTCGTTTCCCCATATTTCACTC
TTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGTGTTTGATTATTTTCTTTTTTTTTTTTTAAT
TTATTTATTTTTTCTATGCCTAAAAAAAGGGTGCTTTTTTTGATTTCGNT
TTTCTAAGGGGTAATTACTATGGATATATTATTTTTCATGCAGATTTAGA
ATTTTGGATAATTCATGTTTGTGTATTTGTAACAGGATCTAAGCATCTGT
TTTTATGTGTTAGGTAATTTTTTTGTTATTGTTTTTTTTTTTTCTGTTGT
TGCGCCGCCGGCTTTTTTTTTTTTACACAGCGGAAGGGGAAAAGAAGAAA
AATTTTTTTTTTTTTCCCCCCCCCCCCCCGAAGAAAAAAGGAAAAAAGAT
GGCGGGGGGGCCCCCCCCCAAAAAAAAAAAAAAAACATGTTGTGGGGGGG
GGGGTTGGGTTTTTTTTTTCCCCTTTTGTTTTTTTTACTTTATCGTTTAA
TATACTTTTGTTTTTGGTAGATCATAATTATCTCGTTTTATTTTTGTTGT
TTCTAAGTATTTTTTATTTTTTTTAGTATCATCTTTTACGTGCCTCATTT
TTTTAATATTTGATTTATGTCTGGTTGTATCTATACTTATTGTTTTTTTT
TGACAATTGTTTGTTTATTTATTTTCATTTAATTTTTTCTTATATGTTTC
GATCTCTTTTGCCGATGATCCTTTTTTTTTTTTCTCTTTATATTATATAT
GGATATGATATATTATATTTTTTTATTTTTACATTCTAGGCTAATTTTTT
TTTACTTTTTATTCACCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_e04.b1 MSMg01no290_e04.b1 CHROMAT_FILE:
MSMg01no290_e04.b1 PHD_FILE: MSMg01no290_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:45 2005
         (158 letters)



>mm_chr6_129304799_129305359
          Length = 561

 Score =  275 bits (142), Expect = 1e-78
 Identities = 153/158 (96%), Gaps = 3/158 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacatatatatcaacctatctgggttaagctggca---ttttttttttgcctactcaac 57
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 358 ctacatatatatcaacctatctgggttaagctggcatttttttttttttgcctactcaac 299

                                                                       
Query: 58  aaaagatataacaaaagatctaatataatgacaatagagaatatgcaccatgtggttttt 117
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 298 aaaagatataacaaaagatctaatataatgacaatagagaatacgcaccatgtggttttt 239

                                                 
Query: 118 atggaagtggtgagcctgcgccatgatcgacatccact 155
           |||||||||||||||||||||||||||| |||||||||
Sbjct: 238 atggaagtggtgagcctgcgccatgatcaacatccact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 561
Length adjustment: 8
Effective length of query: 150
Effective length of database: 553
Effective search space:    82950
Effective search space used:    82950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)