TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTTTTTTACTTTAATTTATTTAGGTAGAATTCTTAAATTTTA
AGTATAGTAAAATTTTATTGAACAAGTTTAATCACATATTTTTACTTAAA
TTTGACACAAAGCAATTTCTGACAATAGAGGGGAAATGGATTTCTTTTCT
GATATCATATTTGAAGTCCAATTCACAGTCTCGTGTGAAGTTATTGTTTC
AAATTCAAAGTTGATTTATTTAACTCATCATTTTTTTCTTAGAGAATATC
ACACACATACAGACCAAAATATACACAGTCACAAATACACACAAACACAT
ACAACCCAAACACAGACACACACCACTCCTTCCATATATATTAACACACA
GAGACCACACATACATATGCACACACCCCATATACACATACACACCCATA
AGCTCAGGCACACACATACACACACACACACACACACACACACACACACA
CACACACACACAGGACTACTGCTTGTACATCACTGTGATCCCATCTCAAC
ATTTGGAAATCTGACTACAGGGGTATCATGAGTTCCAAACTAGCCTGTGA
TATATTAGAATAGTCTGCTTCATGAAACTTAAAGCAGTGGGGCAGTAGTG
GCACAAGCTTTTAATCCCAGCACTTGGGAGGCAGAAGCAGGTGAATTTCT
GAGATGGAGGCCAGCCTGGTCTACACAATGAGTTN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTATTTCATTCTTACCAATGGACAGGTCA
TTTAAACAGAAACTAAACAGAGACCTTTAAACTAAAAGAAGTTATGGACC
AAATGGATTTAACAGATATTTACAGAACATTTCACCCCAAATTAAAAAAA
CAAGCCTTCTTCTCAGCACCTCACAGAACCTTCTCCAAAACTGATCATAT
ACACAGACACAAAATAAACCTCAACAAATGCACGAAGATTGAAATAATCC
TTTGCATCCTATCAGATCACCAAGGACTAAGCCGGGACTTCAATAACAAC
AAAAACAGCATTATTTTCACATACCCATGAAAACTGAACAATTCTCTACT
CAATGATAATTTGGTTAGAGAGAAATACAGAAAGAAAGATTTTCTAGAAT
GCAATGAAATTGAAGGCACAACATACCCAAACTAATGGGACACAGAGAAT
TCACAATAGAAGACTCTCGAATGGCCAAGAAGCACTTAAAGAAATATCTA
ACATCCTTAGTCATCAGTGAAACATAAAACTATAAGATATTGAGATTCAA
CCCTATACCACATAGTACTGTTAAATTAAAAAACTCAAGTGACAGCACCC
ACTGTCAAGGATGTAGAGAAAGGGTAATACTCCTCCATTGGTGGTGGGAC
TGCAAACTGGTACACCACTCTGGAAATTACTCTGG

Query= MSMg01no290_f07.b1 MSMg01no290_f07.b1 CHROMAT_FILE:
MSMg01no290_f07.b1 PHD_FILE: MSMg01no290_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:51 2005
         (552 letters)



>mm_chr6_102752604_102753556
          Length = 953

 Score =  791 bits (409), Expect = 0.0
 Identities = 446/469 (95%), Gaps = 19/469 (4%)
 Strand = Plus / Minus

                                                                       
Query: 35  aggtagaattcttaaattttaagtatagtaaaattttattgaacaagtttaatcacatat 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aggtagaattcttaaattttaagtatagtaaaattttattgaacaagtttaatcacatat 396

                                                                       
Query: 95  ttttacttaaatttgacacaaagcaatttctgacaatagaggg-gaaatggatttctttt 153
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 395 ttttacttaaatttgacacaaagcaatttctgacaatagagggaaaaatggatttctttt 336

                                                                       
Query: 154 ctgatatcatatttgaagtccaattcacagtctcgtgtgaagttattgtttcaaattcaa 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctgatatcatatttgaagtccaattcacagtctcgtgtgaagttattgtttcaaattcaa 276

                                                                       
Query: 214 agttgatttatttaactcatcatttttttcttagagaatatcacacacatacagaccaaa 273
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 275 agttgatttatttaactcatcatttttttcttagagaatatcacacgcatacagaccaaa 216

                                                                       
Query: 274 atatacacagtcacaaatacacacaaacacatacaacccaaaca----cagacacacacc 329
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 215 atatacacagtcacaaatacacacaaacacatacaacccaaacaaacacagacacacacc 156

                                                                       
Query: 330 actccttccatatatattaacacacagagaccacacatacatatgcacacaccccatata 389
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 155 actccttccatatatattaacacacagagaccacacatacatatgcacagaccccatata 96

                                                                       
Query: 390 cacatacacacccataagctcaggcacacacatacacacacacacacacacacacacaca 449
           ||||||||||||||||||||||||||| ||||              ||||||||||||||
Sbjct: 95  cacatacacacccataagctcaggcacgcaca--------------cacacacacacaca 50

                                                            
Query: 450 cacacacacacacacacaggactactgcttgtacatcactgtgatccca 498
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  cacacacacacacacacaggactactgcttgtacatcactgtgatccca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space:   511106
Effective search space used:   511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)