BAC Information

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BAC

Clone NameMSMg01-290N05
Chromosome6 (Build37)
Map Location 132,457,043 - 132,457,723
singlet/doubletsinglet
Overlap genenone
Upstream gene5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818
Downstream genePrh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290N05.T7 (MSMg01no290_n05.b1)MSMg01-290N05.TJ (MSMg01no290_n05.g1)
ACCAG419999AG420000
length739741
length of high quality
(start - end)		685 (45 - 729)609 (72 - 680)
definitionCHROMAT_FILE: MSMg01no290_n05.b1 PHD_FILE: MSMg01no290_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:28 2005CHROMAT_FILE: MSMg01no290_n05.g1 PHD_FILE: MSMg01no290_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATATTATGTTCTTTTATGATTATCAAAGCAAGAAATCTTGTATTC
TTTACTCCACACTGGAACTTTTGCCCAGCAGGATGAGGTAAGGATGAGGT
GCCAGTGTCCGTATTCTAAACGGTCACACAGTAAGAGTAAATTAGAAACA
AATTATGTGTAAGAGAGTACCCCAGATATTGAAGGTAAGGACTATCAGTA
TATGAATATCTCATTGCATTTGCTGACATTATCTGTGTACAACTGTTCAT
TGGGGTAGGGCTGGTGTTTGTTCACATCTGTTTATAGTGTCAGTAATGAT
TTCCATCCAAATTCGATATAATCAATGTCTCTGATCAGTAGGATAGCTTA
AGCACTATCACTTATATGTGTCCTTATATATACTATAGTTAATTAAGACT
GATGGTGTTGAGGCTATTCATATATAAATTTCAATTACAACAAGACACTT
GGAATTCCTAACATGCTAAGTCTTAATAAGAGTGCTCACAGTTCTCTTGA
CCTAATCCAATAACTACAACATTCACTAGTAAAACATGAGAACTATTACA
TCACTAAAATCCTAACAAAAGTGGCATCACAGCACATATAAAGTATAGGT
GAGTCAGTACCATGAATCTGTAATTCCATGATGAGTTTTTTGATCATATT
AAATTTTGAAGTTTCATAGACAGCTTTACTTTCTAAATG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTAGGCAAACCATAGGTTTGCAGAGGAT
TTTTAAAAGGAAACACCCTACCTGTGCATCATATATAATATATTGCTTCA
ATCTGTGGAAGAAATAGAATATCGCTCTTTTTAACAAAGCCTAGCTTCGA
GTTCTTCCAGTGTATGACCCTGCTGTAAAGTCAATGCTGGGAAGGTTGTT
CTATTTATCTCTGGGGAAGCATCTAGTCATTATTGTAATAAAATAAAGAA
ATAATAGAGTTATTACAGAATTGCATATTTACAGATGTAAATGGTACATA
GAAGGTCAAGAGATGATGGATCTGCTTTTACCTAGGAGCTGAGAATTTGA
GTCTTCGTAGGTGATCTCTAGAAAATAAGCACAAAGAAGTTGAAAGTTAC
TTATGGCATTTTCTAGTTGCTGAGAATACTACCAGGATCATTTCGACCCT
TGGTAGAAATGACAATTTAGTTCCTTCTTATATGTATCAAACTTTACTGA
TACTGTTCATTAACATTACCACAACTTCAGGGAGACATGATTATAAAAGT
TTTCCTTTATGATCTTAATTTCTTATATGATATAGCCCCAAGTATTTCAT
TCATTGAAATAAGAAAATATATTGCTTTCAGTNAAATGTAAAATACAATG
AATATTGAGCAGCTATCATGAAAAAAAGAAAGAGAACATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_n05.b1 MSMg01no290_n05.b1 CHROMAT_FILE:
MSMg01no290_n05.b1 PHD_FILE: MSMg01no290_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:28 2005
         (685 letters)



>mm_chr6_132456839_132457923
          Length = 1085

 Score = 1278 bits (661), Expect = 0.0
 Identities = 676/681 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatattatgttcttttatgattatcaaagcaagaaatcttgtattctttactcc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 gaattccatattatgttattttatgattatcaaagcaagaaatcttgtattctttactcc 826

                                                                       
Query: 65  acactggaacttttgcccagcaggatgaggtaaggatgaggtgccagtgtccgtattcta 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 825 acactggaacttttgcccagtaggatgaggtaaggatgaggtgccagtgtccgtattcta 766

                                                                       
Query: 125 aacggtcacacagtaagagtaaattagaaacaaattatgtgtaagagagtaccccagata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 aacggtcacacagtaagagtaaattagaaacaaattatgtgtaagagagtaccccagata 706

                                                                       
Query: 185 ttgaaggtaaggactatcagtatatgaatatctcattgcatttgctgacattatctgtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ttgaaggtaaggactatcagtatatgaatatctcattgcatttgctgacattatctgtgt 646

                                                                       
Query: 245 acaactgttcattggggtagggctggtgtttgttcacatctgtttatagtgtcagtaatg 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 645 acaactgttcattggggtagggctggtgtttgttcatatctgtttatagtgtcagtaatg 586

                                                                       
Query: 305 atttccatccaaattcgatataatcaatgtctctgatcagtaggatagcttaagcactat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 atttccatccaaattcgatataatcaatgtctctgatcagtaggatagcttaagcactat 526

                                                                       
Query: 365 cacttatatgtgtccttatatatactatagttaattaagactgatggtgttgaggctatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cacttatatgtgtccttatatatactatagttaattaagactgatggtgttgaggctatt 466

                                                                       
Query: 425 catatataaatttcaattacaacaagacacttggaattcctaacatgctaagtcttaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 catatataaatttcaattacaacaagacacttggaattcctaacatgctaagtcttaata 406

                                                                       
Query: 485 agagtgctcacagttctcttgacctaatccaataactacaacattcactagtaaaacatg 544
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 405 agagtgctcacagttctcttgacctaatccaatcactacaacattcactagtaaaacatg 346

                                                                       
Query: 545 agaactattacatcactaaaatcctaacaaaagtggcatcacagcacatataaagtatag 604
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agaagtattacatcactaaaatcctaacaaaagtggcatcacagcacatataaagtatag 286

                                                                       
Query: 605 gtgagtcagtaccatgaatctgtaattccatgatgagttttttgatcatattaaattttg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtgagtcagtaccatgaatctgtaattccatgatgagttttttgatcatattaaattttg 226

                                
Query: 665 aagtttcatagacagctttac 685
           |||||||||||||||||||||
Sbjct: 225 aagtttcatagacagctttac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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