BAC Information

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BAC

Clone NameMSMg01-291A07
Chromosome6 (Build37)
Map Location 98,495,475 - 98,495,922
singlet/doubletsinglet
Overlap geneLOC665963
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, Gm765, LOC666019
Downstream geneLOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291A07.T7 (MSMg01no291_a07.b1)MSMg01-291A07.TJ (MSMg01no291_a07.g1)
ACCAG420137AG420138
length738746
length of high quality
(start - end)
366 (47 - 412)595 (72 - 666)
definitionCHROMAT_FILE: MSMg01no291_a07.b1 PHD_FILE: MSMg01no291_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:42 2005CHROMAT_FILE: MSMg01no291_a07.g1 PHD_FILE: MSMg01no291_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATAAAATTCTTACACAAATGGATGGAACTAAAAAAATCATCCTA
AGTGAGGTAACCCAACTGCAACAGAACACACATGGTATGTACTCACTGAT
AAGTGGATTATTAGCCCAGAAGTCAGAATACCCAAGATACAATTCATAGA
CCACATGAAGCTCAAGAAGAAGGAAGACCACAGTGTGGATACTTTGGTCC
TCTTAGAAGGGGGATCAAAATACACATGGGAGGAGATACAGAGACAAAGT
GTGGAGCAGCACCTGAAAGAAAGGCCATCCAGTGACTGTACCACCTGGAG
ACCCATCCCATATACAGTCACCAAACCCAGACACTATTGTGGATACTTGC
TGACAGGAGCCTGACATAGCTGTCTCCTGAGAATCTCTGCCAGTGCCTGA
CAAATACAGAAGTGGATGCTCACAGCCATCCATTGGACTGAGCACAGTGT
CTCCAAGGGAGGAGCTAGAGAAAATACCCAAGGAGTTGAAGGGATTTGTA
GACTCATAGGAGAAACAACAATATGAACCAGCCAGTACCACCAGAGCTCC
CAGGGACTAAATCACCAACCAAAGAATACACATGGAGGGACTCAAGGCTC
CAGCCGCATATGTAGCAAAGGATAGCCTTGTGCGATGTCAATGAGAGGAG
AGGCCCTTGGTCCTGTGAAGGCTCGATGCCCCAGCATG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCCCGCGAAATTCTCTATCTAGAGTGATCTAAAAGCCC
CACGGTGGTGTTGTTTTTGCCCTGTTGAGTTACTGAATTCCCTCCCCCTT
GCTTTAGCCCACGTTCCCATCTTGGAAATATACCTCTTCTTAATAAATCC
TCTCTGTTCTCTGGTTATTGCGCCTGCTCCACTTGTTCCAGAACATAAGA
ACTTGGAATCCTTTTAAGAGGGAACCCCAAAAGTCCCAAAGAACAGCTAA
ACTTGTCTTAAACCCATTATTTTTTTTAAATATTTTTTATTATTACGTAT
TTTCCTCAATTACATTTAGAATGCTATCCCAAAAATCCCCCATACCCTCC
CCCCCCACTTCCCTACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCC
CTGTACTAGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTCTTTCCAG
TGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAG
CTCCGGGGTACTGGTTAGTTCATAATGTTGTTGCACCTACAGGGTTGCAG
ATCTCTTTAGCTTCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCT
GTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG
CCCCGGCCTAGTCTCACAAGAGAGAGCTATATCAGGGTCCTTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_a07.g1 MSMg01no291_a07.g1 CHROMAT_FILE:
MSMg01no291_a07.g1 PHD_FILE: MSMg01no291_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:42 2005
         (595 letters)



>mm_chr6_98495475_98496469
          Length = 995

 Score =  791 bits (409), Expect = 0.0
 Identities = 439/453 (96%), Gaps = 9/453 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctctatctagagtgatctaaaagccccacggtggtgttgtttttgc----cctgttg 56
           ||||||||||||||||||||||||||||||||||||||||||    |||     ||||||
Sbjct: 448 attctctatctagagtgatctaaaagccccacggtggtgttg----tgcgtgggctgttg 393

                                                                       
Query: 57  agttactgaattccctcccccttgctttagcccacgttcccatcttggaaatatacctct 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agttactgaattccctcccccttgctttagcccacgttcccatcttggaaatatacctct 333

                                                                       
Query: 117 tcttaataaatcctctctgttctctggttattgcgcctgctccacttgttccagaacata 176
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 332 tcttaataaatcttctctgttctctggttattgcacctgctccacttgttccagaacata 273

                                                                       
Query: 177 agaacttggaatccttttaagagggaaccccaaaagtcccaaagaacagctaaacttgtc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agaacttggaatccttttaagagggaaccccaaaagtcccaaagaacagctaaacttgtc 213

                                                                       
Query: 237 ttaaacccattattttttttaaatattttttattattacgtattttcctcaattacattt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ttaaacccattattttttttaaatattttttattattacgtattttcctcaattacattt 153

                                                                       
Query: 297 agaatgctatcccaaaaatcccccataccctccccccccacttccctacccacccattcc 356
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 152 agaatgctatcccaaaaatcccccataccct-cccccccacttccctacccacccattcc 94

                                                                       
Query: 357 cattttttggccctggcattcccctgtactagggcatataaagtttgcatgtccaatggg 416
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 93  cattttttggccctggcattcccctgtactagggcatataaagtttgcgtgtccaatggg 34

                                            
Query: 417 cctctctttccagtgatggccgactaggccatc 449
           |||||||||||||||||||| ||||||||||||
Sbjct: 33  cctctctttccagtgatggctgactaggccatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)